Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04894 ATGCAATTTGCTGAAAATGTTGGGGATAGCAGAAAGCTGAAGCGCAAGATTGAGGAGCCACCTAACTCTGATGCTGCAAACTCAGAGCCATTGCTAACTCTGAGTTTGGGTACCAAGTTCCCAACATTCAAACCCAATGATGAAGAAGTGATAGCCATGAGAGAATTCCCTTGCAAATATTGCAACAAAAAGTTCCCAAGTTCTCAAGCTCTGGGTGGACACCAAAACGCTCACAGGCGTGAAAGGGTGCTCTCACGGTTAGACAAGGAATTTAATTTGGGCACTTTTGGGCTTGGTGTTCATCACCTTTGTCCTTACTCTATGATGGCAAATCACCAATACCCTTTTAATGGGCCACCCTTTTATCATGCAACCCACATGAACCATCCCATTCCCATGGCTCATCCTCACATGCCATGGGCTCATTTTGGGCCTGGCTATGTCAACCAATTTGGGATGACCAACTCTGGGGGTGCAAGTGCTCAAATTGCACAGAATTTGTACCCCAACGATGTGGGATTTGGTTATGAACTTGATCAGGTTTCTCCACGTGCTGTTGGAGATGCAACTAATAGAGTTCCCATGCCTCCAGCTGGTCTTGGCACCCTTATGGGAAATCAATATGTTGGGAACCAGCAATTTTCATCCTCAGTGCCTGATTTATCCCTTAGCCTTTAA 678 0.4572 MQFAENVGDSRKLKRKIEEPPNSDAANSEPLLTLSLGTKFPTFKPNDEEVIAMREFPCKYCNKKFPSSQALGGHQNAHRRERVLSRLDKEFNLGTFGLGVHHLCPYSMMANHQYPFNGPPFYHATHMNHPIPMAHPHMPWAHFGPGYVNQFGMTNSGGASAQIAQNLYPNDVGFGYELDQVSPRAVGDATNRVPMPPAGLGTLMGNQYVGNQQFSSSVPDLSLSL. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04894 225 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Seca7g04894 225 Pfam C2H2-type zinc finger 56 81 - -
Seca7g04894 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Seca7g04894 225 Gene3D Classic Zinc Finger 46 92 - -
Seca7g04894 225 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 46 134 IPR044246 GO:0009788
Seca7g04894 225 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Seca7g04894 225 MobiDBLite consensus disorder prediction 8 22 - -
Seca7g04894 225 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04894 Seca-Chr7 143565578 143566282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04894 48 86 C2H2 Transcription Factor Family AT1G80730 61.538 1.09e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g04894 zf-C2H2_6 2.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04894 - - aprc:113874385 196.823