Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04873 ATGGCGAGACGTCTGGTTCCTCTGCTCAACCGTGTTTTGGTGGAGAAAATCATCCCTCCATCAAAAACCAACACTGGGATTCTCTTACCAGAAAAGTCCTCCAAGTTGAATTCTGGAAAAGTTATTGCGGTTGGCCCTGGCATTCATGGTAAGGATGGGAAGCAGATTCCTGTAGCTTTAAAAGAAGGTGACACTGTCCTTTTACCTGAATACGGAGGAACTGAAGTGAAGCTTAATGACAAAGAGTAA 249 0.4418 MARRLVPLLNRVLVEKIIPPSKTNTGILLPEKSSKLNSGKVIAVGPGIHGKDGKQIPVALKEGDTVLLPEYGGTEVKLNDKE. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04873 82 PANTHER 10 KDA HEAT SHOCK PROTEIN 2 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca7g04873 82 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca7g04873 82 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca7g04873 82 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca7g04873 82 CDD cpn10 4 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca7g04873 82 FunFam 10 kDa chaperonin, mitochondrial 1 82 - -
Seca7g04873 82 SMART Cpn10_2 4 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca7g04873 82 SUPERFAMILY GroES-like 4 82 IPR011032 -
Seca7g04873 82 Pfam Chaperonin 10 Kd subunit 5 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca7g04873 82 Gene3D GroES chaperonin 1 82 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04873 Seca-Chr7 143259268 143260441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04873 3 80 Calmodulin-binding Proteins AT5G20720 39.241 1.95e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04873 K04078 - gmx:100306384 143.28