Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04867 ATGACCATGATGAATTCAGGGTCACTTGATTACTGGAGGAATTACTTTAGAGGTGCTAACGCTGATATCTTTGTTATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAAGTTAAGGAGGGGTTCGATTGCAGAACGCTTGTTCTCTTGCAGGTTGACTCGCTGTTCAGGGTGTGACAGAGATGAGTTGGTTGTGTCTGTGGATGATGGTATTGGTGATGGTGGTGGTGGTTGCAATTGCAAGAGCGGCTCTGATGGAGATGGTACTGAGCTTGAGTTTGAAGCGGGGGCAAGTAAAGAGAGCAAGGTCAATAGTTGCAGAGATGATCATGGAGAGATGAATATGAACCAAGTTAGCAATTACAGCTTTGGGGAGGCTCAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGTATTTTGAGGAGGTGTTGAGGATCAGAGATATTGTGCTTAACTTTAAAGAAGAGTCTGATTCAGTGTTATTTGAGTCATTGAGGAGGCTTCAATTGATGGAACTCACTGTGGATCTCCTGAAGGCAACCGAGATTGGAAAGGCTGTTAATCCTCTTCGAAAGCATGGATCAAAGGATATTTCACTACTTGCACGGACTCTTATCAATGTCTGGAAAGGAATGGTGGATGAGTGGGTCAAGGCTACCACACCTATTGCAGGTTCAGAAGGCACTCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAAGAGGGACTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAACTCAAACTGGTTCAATGGAACTCTCGCAGTTCTTTGATGGCATGGATGATGATGGAAGTGAGTTGACTATGGAATTTCTTATGCTTAGTCTTGCTATCTTTTGCTCTTTGGTTCTTTATTTGAATTCCCCACTTCTTAGTTTGATGGTTGTGAATGGGGAATTCTGTTTTAGATCCTCAACAAAGTGGGGAATTCATCAAGAACCGAGATGGCAGAAGACCATGTATCAACAGTCAAAATATAGCAAAGCCAAATAG 1044 0.432 MTMMNSGSLDYWRNYFRGANADIFVIIDHAIMVAASDCPKEFKLRRGSIAERLFSCRLTRCSGCDRDELVVSVDDGIGDGGGGCNCKSGSDGDGTELEFEAGASKESKVNSCRDDHGEMNMNQVSNYSFGEAQALTDEIEEESQYFEEVLRIRDIVLNFKEESDSVLFESLRRLQLMELTVDLLKATEIGKAVNPLRKHGSKDISLLARTLINVWKGMVDEWVKATTPIAGSEGTPDSVNPSVVDEEEGLPSPPMDEGALFATQTGSMELSQFFDGMDDDGSELTMEFLMLSLAIFCSLVLYLNSPLLSLMVVNGEFCFRSSTKWGIHQEPRWQKTMYQQSKYSKAK. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04867 347 CDD TFIIS_I 147 220 - -
Seca7g04867 347 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 230 IPR035441 -
Seca7g04867 347 Pfam TFIIS helical bundle-like domain 171 219 IPR017923 -
Seca7g04867 347 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 282 IPR044805 -
Seca7g04867 347 MobiDBLite consensus disorder prediction 230 251 - -
Seca7g04867 347 ProSiteProfiles TFIIS N-terminal domain profile. 147 222 IPR017923 -
Seca7g04867 347 SMART TFS2_5 146 221 IPR003617 GO:0005634
Seca7g04867 347 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 145 233 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04867 Seca-Chr7 143166802 143173114 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca7g04867 Med26 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04867 - - gmx:100775579 438.343