Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04865 ATGATGAATTCAGGGTCGCTTGATTACTGGAGGAATTACTTTAGAGGTGCTAACGCTGATATCTTTGGTATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAAGTTAAGGAGGGGTTCGATTGCAGAACGCTTGTTCTCTTGCAGGTTGACTCGCTGTTCAGGGTGTGACAGAGTTGAGTTGGCTGTGTCTGCGTCTGCGGATGATGGTGGTGGTTGCAATTGCAAGAGCGGCTCTGATGGAAATGGTACTAAGCTTGAGTTTGAAGCGGGGTCAAGCAAAGAGAGCAAGGTCAATAGTTGCAGGGATGATCATGGAGAGATGAATATGAACCAAGTCAGCAATTACAGCTTTGAGGAGGCTGAGGCATTGATTGATGAGATTGAAGAAGAGTCTCAGTATTTTGAGGAGGTGTTGAGGATCAGAGATATTGTGCTTAACTTTAAAGAAGAGTCTAATTCAGAGTTATTTGAGTCATTGAGGAGGCTTCAACTGATGGAACTCACTATGGATCTCCTGAAGGCAACCGAGATTGGAAAAGCTGTTAATCCTCTTCGAAAGCATGGATCAAAGGATATTTCTCAACTTGCACGGACTCTTATCAATGTCTGGAAAGGAATGGTGGATGAGTGGGTCAAGGCTACCACACCTATTGCAGGTATAAAAAGTTCAGAAGGCACTCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAAGAGGGACTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAATTGCAACTCAAACTGGTTCAATGGATCTCTCAAAGTTCTTTGATGGCATGGATGATGATGGAAGTGAGTTCACTATGGAATTTCTTATGCTTAGTCTTGCTATCTTTTGCTCTTTGGTTCTCTATTTGAATTCCCCACTTCTCAGTTTGATGGTTGTGAATGGGGAATTCTGTTTTAGATCCTCAACAAAGTGGGGAATTCATCAAGAACCAAGATGA 999 0.4304 MMNSGSLDYWRNYFRGANADIFGIIDHAIMVAASDCPKEFKLRRGSIAERLFSCRLTRCSGCDRVELAVSASADDGGGCNCKSGSDGNGTKLEFEAGSSKESKVNSCRDDHGEMNMNQVSNYSFEEAEALIDEIEEESQYFEEVLRIRDIVLNFKEESNSELFESLRRLQLMELTMDLLKATEIGKAVNPLRKHGSKDISQLARTLINVWKGMVDEWVKATTPIAGIKSSEGTPDSVNPSVVDEEEGLPSPPMDEGALFAIATQTGSMDLSKFFDGMDDDGSEFTMEFLMLSLAIFCSLVLYLNSPLLSLMVVNGEFCFRSSTKWGIHQEPR. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04865 332 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 2 281 IPR044805 -
Seca7g04865 332 MobiDBLite consensus disorder prediction 228 249 - -
Seca7g04865 332 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 223 IPR035441 -
Seca7g04865 332 CDD TFIIS_I 142 215 - -
Seca7g04865 332 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 225 IPR035441 -
Seca7g04865 332 Coils Coil 124 144 - -
Seca7g04865 332 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Seca7g04865 332 SMART TFS2_5 141 216 IPR003617 GO:0005634
Seca7g04865 332 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04865 Seca-Chr7 143111425 143114964 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca7g04865 Med26 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04865 - - gmx:100775579 427.172