Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04863 ATGCTAGCATTATCTCCTTCTCCTGTGTTCTCTACCATTGGATATTGGCCTTATGAGGAGCCTATAAGCCATAGCCAGAACAACTACTTTTACAAACACACAGAGGACTCAGAACTATTTCATCATCAGCCACAGGTTGAGATCCAGAATTCCACTCCCTCACCAGCAATAAGCAGTGAGCTTAGCATGGTTAAGAAGCTTATTCACAATGCTAGTGAACGTGATCGCAGAAAGAAGATCAATGCTCTGTATTCTTCACTTCGTTCACTTCTTCCTGTGGCAGATCAAATGAAAAAATTGAGCATTCCAGCAACAATTTCAAGAGTCCTAAAATATATACCGGAGTTACAGAAGCAGGTGGAAGGACTAACTAAGAAAAAGGAAGAGATCTTATTGAGAATTTCTAAGCAAGGGGATGCAGTCATCAGCAAAGAATCTCAAAGGAAGATTGTCCATTCCAAATCCAACTCTGGTTTTGTGGTTTCAACAAGTAGACTCAGTGATAGTGAGGCTTCTATTCAGATTTCATCTTATACTCTCCACAAGATTCCACTTTCTGAGATCTTGCTGTGTTTGGAAAATGATGGCCTTGTACTGCTAAATTCTTCTTCCTCTGAGACATTTGGAGGGAGGACCTTCTATAACTTGCATTTCCAGGTGGATAAAACACAGAGGTTAGAATCAGAGGTTCTGTATGAGAAGCTTTTGTCAATAATTGATAAAAATGGGAACTTTCTAGTGAAATGA 747 0.3963 MLALSPSPVFSTIGYWPYEEPISHSQNNYFYKHTEDSELFHHQPQVEIQNSTPSPAISSELSMVKKLIHNASERDRRKKINALYSSLRSLLPVADQMKKLSIPATISRVLKYIPELQKQVEGLTKKKEEILLRISKQGDAVISKESQRKIVHSKSNSGFVVSTSRLSDSEASIQISSYTLHKIPLSEILLCLENDGLVLLNSSSSETFGGRTFYNLHFQVDKTQRLESEVLYEKLLSIIDKNGNFLVK. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04863 248 Gene3D - 58 148 IPR036638 GO:0046983
Seca7g04863 248 Coils Coil 113 133 - -
Seca7g04863 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Seca7g04863 248 SMART finulus 70 122 IPR011598 GO:0046983
Seca7g04863 248 Pfam Helix-loop-helix DNA-binding domain 66 117 IPR011598 GO:0046983
Seca7g04863 248 CDD bHLH_AtORG2_like 65 137 - -
Seca7g04863 248 FunFam Transcription factor ORG2 60 154 - -
Seca7g04863 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 133 IPR036638 GO:0046983
Seca7g04863 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04863 Seca-Chr7 142991118 142993815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04863 1 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 44.314 6.67e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g04863 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04863 - - vvi:100262373 283.108