Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04862 ATGAAGGTTATTTATATACATATAGCTAGTCATGATCACTGTCTCATTCATTATCTAACAAGGAAATTTCTTAACTGCTTCCAACTAATCCCAATTATGCTAGCATTATCTCCTTCTCCTATGTTCTCTACCATTGGATATTGGCCCTATGAGGAGCCTCTAAGCCAAAGCCAGAACAACTACTTCTACAAACACACAGAGAACTCAGAACTATTTCATCATCAGCCACAGGTTGAGATCCAAAGTTCCACTCCCTCACCGGCCATAATCAGTGACCTTACAATGGTGAAGAAGCTTATTCACAATGCAAGTGAACGTGATCGCAGAAAGAAGATCAATGCTCTGTATTCCTCACTTCGTTCACTTCTTCCTGTTGCAGATCAAATGAAAAAGTTGAGCATTCCAGCAACAATTTCAAGAGTCGTAAAGTACATACCTGAGTTACAGAAGCAGGTGAATGGACTGACTAAGAAAAAGGAAGAGATTTTATTGAGAATTTCTAAGCAAGGGGATGCAGTGATCAACAAAGAAACTCAAAGGAAGATTGTCCATTCCAAATCCAACTCTGGTTTTGTAGTTTCAACAAGTAGGCTCAATGATAGTGAGGCTTCTATTCAGATATCATCTTATACTGTCCACAAAATTCCACTTTCTGAGATCTTGCTGTGTTTAGAAAATGATGGCCTTGTTCTGCTAAATGCTTCTTCTTCTGAGACATTTGGAGGGAGGACCTTCTATAACTTGCATTTCCAGGTGGATAAAACACAGAGGTTAGAATCAGAGGTTCTGTATGAGAAGCTTTTGTCAATAATTGATAAAAATGGGAACTTTCTAGTGAAATGA 843 0.3843 MKVIYIHIASHDHCLIHYLTRKFLNCFQLIPIMLALSPSPMFSTIGYWPYEEPLSQSQNNYFYKHTENSELFHHQPQVEIQSSTPSPAIISDLTMVKKLIHNASERDRRKKINALYSSLRSLLPVADQMKKLSIPATISRVVKYIPELQKQVNGLTKKKEEILLRISKQGDAVINKETQRKIVHSKSNSGFVVSTSRLNDSEASIQISSYTVHKIPLSEILLCLENDGLVLLNASSSETFGGRTFYNLHFQVDKTQRLESEVLYEKLLSIIDKNGNFLVK. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04862 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 165 IPR036638 GO:0046983
Seca7g04862 280 SMART finulus 102 154 IPR011598 GO:0046983
Seca7g04862 280 CDD bHLH_AtORG2_like 97 169 - -
Seca7g04862 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 148 IPR011598 GO:0046983
Seca7g04862 280 Gene3D - 92 181 IPR036638 GO:0046983
Seca7g04862 280 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 79 269 - -
Seca7g04862 280 FunFam Transcription factor ORG2 92 177 - -
Seca7g04862 280 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04862 Seca-Chr7 142955701 142958133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04862 33 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 44.314 2.60e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g04862 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04862 - - gmx:100803424 278.87