Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04833 ATGGGATTCCTTATGAGATATGGGCAGGTGCAAACAGGGCATGAGGAAGTGCAACCTAGCCATGGGCCTAATTCTAGAAGGGGTAAGAAGGGAATTGCTCAGAGCAAAGGAGGCATTGACTATGATATTAATGATGATTTGAGCTTTTACCGTTTATTGCATGCAAGTAAAATCAACTGTTTTTTCTTTTTTACACAGGTTACTCGTTCCATTGGTGATGACGATCTGAAGCCTGCTGTAACTGCAGAGCCTGAGATAACCGATACTACCTTATGTGAAGAGGATGAATTTCTGGTCATGGCTAGTGATGGCCTCTGGGATGTCATAAGCAGCATGGAGATCATAAATATAATAAAAGACACTGTTAAAGAGCCTGGAATGTGCTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAAGATAACATCACAGTTATTGTCGTTTTTTTACGTCCTGTATCTACAGCAGAGAGAATTTATTAG 489 0.4151 MGFLMRYGQVQTGHEEVQPSHGPNSRRGKKGIAQSKGGIDYDINDDLSFYRLLHASKINCFFFFTQVTRSIGDDDLKPAVTAEPEITDTTLCEEDEFLVMASDGLWDVISSMEIINIIKDTVKEPGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04833 162 ProSiteProfiles PPM-type phosphatase domain profile. 1 152 IPR001932 -
Seca7g04833 162 Pfam Protein phosphatase 2C 55 145 IPR001932 -
Seca7g04833 162 Gene3D - 3 157 IPR036457 -
Seca7g04833 162 CDD PP2Cc 66 152 IPR001932 -
Seca7g04833 162 SUPERFAMILY PP2C-like 63 154 IPR036457 -
Seca7g04833 162 MobiDBLite consensus disorder prediction 12 33 - -
Seca7g04833 162 PANTHER PROTEIN PHOSPHATASE 64 150 IPR015655 GO:0004722|GO:0006470
Seca7g04833 162 SMART PP2C_4 2 150 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04833 Seca-Chr7 142525024 142526446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04833 66 162 PP2C-type Phosphatase Gene Family AT2G40860 82.474 3.05e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04833 - - gmx:100785390 184.882