Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04825 ATGCAGCTCCGGATTGTTAATCCTGAATTTGACCGGGGAACTATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTAGTGAAGAAAAAGTTGCACATCACTGCCAAGTCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCTAACACTCTGAAAATGCAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAG 300 0.3967 MQLRIVNPEFDRGTMAQSNWEADKMLDVYIYDYLVKKKLHITAKSFMTEGKVSPDPVANTLKMQQLMLLEVFFLSGGLFSGIFLLQGQMRNILRMLQHI. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04825 99 ProSiteProfiles LIS1 homology (LisH) motif profile. 22 54 IPR006594 GO:0005515
Seca7g04825 99 SMART Lish 22 54 IPR006594 GO:0005515
Seca7g04825 99 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 15 59 IPR044716 GO:0003714
Seca7g04825 99 Pfam LisH 24 50 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04825 Seca-Chr7 142410282 142411053 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca7g04825 LisH 1.8e-07 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04825 - - var:108326218 97.0561