Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04824 ATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAAATTTGAATGTGAAAGATGGTCAACAAATTGCGAACGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAGCTGGTGCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACTCGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTATCTAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGTTGGTCTTGCATCTTCTACAAACCAACTGGATGACATCGAACATTTTGGAGACGTTGAGTCATTTCTCTCACAGGATGATGGTGATGGAAGGGAATTGTTTGCTGTGAAACGGAACCCCTCTGATCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGACACACTGCAAACAGAGAGCACACCTGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACGTCTTCATTTGATACAACTGTGCGGCTTTGGGACGCTGCAGATCCAAGCTTTTCTTTGCAGGCGTATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGCACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGACTGGACAACTTCTTGCTGCAGCATCTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGAAGATGCACACGTTACAGGGACACTCTGCAGAGGTACACTGTGTATGTTGGGATACAAATGGAGAGTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTACCTCTGGGGACTGCATTCATGAACTTAATTCCAGTGGAAATATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTATTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGAACATGGCCGAGAATAAATGTATGACAATACCAGCTCATGAGTGTGTAATATCAGCTCTAGCACAATCACCGGTGACAGGGATGGTTGCTTCTGCCAGTCATGATAAATCTGTAAAGATTTGGAAATAA 1410 0.4355 MDPQRLRGLARGNLNVKDGQQIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMYGTEGAVGLASSTNQLDDIEHFGDVESFLSQDDGDGRELFAVKRNPSDHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMDTLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKGGSTQVRFQPRTGQLLAAASGSVVSLFDVETDRKMHTLQGHSAEVHCVCWDTNGEYLASVSQESVKVWSLTSGDCIHELNSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Seca7g04824 469 Gene3D - 320 469 IPR015943 GO:0005515
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 262 - -
Seca7g04824 469 CDD WD40 184 469 - -
Seca7g04824 469 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Seca7g04824 469 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Seca7g04824 469 PRINTS G protein beta WD-40 repeat signature 456 469 IPR020472 -
Seca7g04824 469 MobiDBLite consensus disorder prediction 17 101 - -
Seca7g04824 469 SUPERFAMILY WD40 repeat-like 182 469 IPR036322 GO:0005515
Seca7g04824 469 Gene3D - 144 319 IPR015943 GO:0005515
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 315 IPR001680 GO:0005515
Seca7g04824 469 MobiDBLite consensus disorder prediction 1 107 - -
Seca7g04824 469 ProSitePatterns Trp-Asp (WD) repeats signature. 207 221 IPR019775 -
Seca7g04824 469 SMART WD40_4 181 220 IPR001680 GO:0005515
Seca7g04824 469 SMART WD40_4 266 306 IPR001680 GO:0005515
Seca7g04824 469 SMART WD40_4 389 428 IPR001680 GO:0005515
Seca7g04824 469 SMART WD40_4 309 345 IPR001680 GO:0005515
Seca7g04824 469 SMART WD40_4 348 386 IPR001680 GO:0005515
Seca7g04824 469 SMART WD40_4 223 262 IPR001680 GO:0005515
Seca7g04824 469 SMART WD40_4 430 469 IPR001680 GO:0005515
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Seca7g04824 469 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 2 469 IPR044716 GO:0003714
Seca7g04824 469 Pfam WD domain, G-beta repeat 270 306 IPR001680 GO:0005515
Seca7g04824 469 Pfam WD domain, G-beta repeat 436 469 IPR001680 GO:0005515
Seca7g04824 469 Pfam WD domain, G-beta repeat 193 220 IPR001680 GO:0005515
Seca7g04824 469 Pfam WD domain, G-beta repeat 229 262 IPR001680 GO:0005515
Seca7g04824 469 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 437 469 - -
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 308 - -
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 262 IPR001680 GO:0005515
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 395 IPR001680 GO:0005515
Seca7g04824 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 469 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04824 Seca-Chr7 142390522 142408904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04824 182 429 U-box Gene Family AT2G33340 27.547 3.09e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04824 - - var:108326218 871.307