Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04816 ATGTACGGCGGTGCTGAATCTGAATCTGAATCTGAGAGCATGAGGAGGCATAAGCATGATGATGATGATATTATTGATAAGGAGAAGGAACAAGGTTCGTTCAAGAGCTGGGCGAAGCAAACAGAAGAGAGCTATCAGTTACAGCTGGCACTGGCGCTTCGCCTTTCCTCTCACTCTGCCTCTGCCGGTGACGCCAATTTCTTGGACTTGGAACCCACCCCTTCCTCTTCCGATTCCTCACAGGCACTCTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAGTTCTAGATGGCTTTTACATAATCCATGGGATGGATGCATATACATGGACTATAAGTACTGATCTGCAGAATGTTGGTATGATTCCATCGTTTGAATCACTGATGTCAGTTAAACCTTCTGATGACTCGTCAATTGTAGTGGTAGCTATTGATAAATCTAGAGATCCTGGTTTGAGAGAACTGCAAAGTAGGGTATTAAGTCTTTCAAGTAACTGGATTACTACAAAAGATGCAACTGATCAGCTTGCAAATCTTGTATATAGTAGGATGGGGGGAGGATCTTCGACCGAGGACAATTTAGGTACACGCTGGAAGGAATGCACCCAAATTCTTAAAAGCTGCCTGCATTCTGTCATTATTCCAATTGGAAGCTTACCTGTTGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCTGACTTAATCAACCTACCTTGCCGAATCGCTAGGGGCTGCAAGTATTGTAGGAAGGACATGGGTGCTTCTTGTATAGTGCAATTTGGTCCTGAGAGGGAGTATATGATTGATTTAATAGGAAGGCCTGGAGCGACATGCCAACCTGATTCTTCCCTGAATTCTGCATCTTCAATGTTGATCCCTTCACCATTATGTCATCCAAAGTTCAAGGCAGTTGAAACAGCTGAATATACAAAGACATTAGCCCAATTGTATTTCGTGGACAGTCAAGCACTGCATCTTGTATTTGATAATATGTCAGGAGGTACAGTTGATTGTAGTGACAGAATGAATCTACAGAGAACAGAAATGTTTGGTGCAAACTATGCTGATGGGAACAGCCATCTAACTGCATTGAGTCCTGGTACAGAGGAATATGTGTCTTTCAATGAAGCAAACCAGTCAGTAATGGATTATCCAAGTCATGAAGTTAACCTTGACGAGGAGGATCTGGACATTCCATGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTCGGAACCGTACTTCGTGCAGACTGGCGTGGTTCCGATGTTGCTGTGAAGATTCTAAAGGTGCAAGGTTTTGATTCTGAACGTTTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTGCGTCATCCAAACATTGTACTTTTAATGGGTGCAGTTATTCAACCCCCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGCAGCTTGTACGAACTTTTGCATACGCCCAGTGTTGGGTCATCACTCAGTGAGAGGCATCGCTTACGCATGGCATATGACGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGTACAAAGGCAAACACATTTCTTTCATCTAAAACAGCAGCCGGGACTCCTGAATGGATGGCACCAGAAGTCATCCGAGGTGAACTATCAAATGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTAGTGACCCTGCAGCAACCATGGAGAAATTTAAACCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAGATTCCAGGACATGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGTCTACGTAA 1950 0.4297 MYGGAESESESESMRRHKHDDDDIIDKEKEQGSFKSWAKQTEESYQLQLALALRLSSHSASAGDANFLDLEPTPSSSDSSQALSHRFWVNGCLQYSDKVLDGFYIIHGMDAYTWTISTDLQNVGMIPSFESLMSVKPSDDSSIVVVAIDKSRDPGLRELQSRVLSLSSNWITTKDATDQLANLVYSRMGGGSSTEDNLGTRWKECTQILKSCLHSVIIPIGSLPVGLCVHRALLFKVLADLINLPCRIARGCKYCRKDMGASCIVQFGPEREYMIDLIGRPGATCQPDSSLNSASSMLIPSPLCHPKFKAVETAEYTKTLAQLYFVDSQALHLVFDNMSGGTVDCSDRMNLQRTEMFGANYADGNSHLTALSPGTEEYVSFNEANQSVMDYPSHEVNLDEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHTPSVGSSLSERHRLRMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDVFSFGVILWELVTLQQPWRNLNPSQVVAAVGFMGKRLEIPGHVNPQVAALIELCWST. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04816 649 ProSiteProfiles Protein kinase domain profile. 410 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04816 649 Pfam Protein tyrosine and serine/threonine kinase 411 648 IPR001245 GO:0004672|GO:0006468
Seca7g04816 649 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 86 648 - -
Seca7g04816 649 SUPERFAMILY Protein kinase-like (PK-like) 387 648 IPR011009 -
Seca7g04816 649 FunFam Serine/threonine-protein kinase isoform 1 400 488 - -
Seca7g04816 649 SMART serkin_6 410 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04816 649 PRINTS Tyrosine kinase catalytic domain signature 572 582 IPR001245 GO:0004672|GO:0006468
Seca7g04816 649 PRINTS Tyrosine kinase catalytic domain signature 591 613 IPR001245 GO:0004672|GO:0006468
Seca7g04816 649 PRINTS Tyrosine kinase catalytic domain signature 484 497 IPR001245 GO:0004672|GO:0006468
Seca7g04816 649 PRINTS Tyrosine kinase catalytic domain signature 525 543 IPR001245 GO:0004672|GO:0006468
Seca7g04816 649 ProSitePatterns Protein kinases ATP-binding region signature. 416 437 IPR017441 GO:0005524
Seca7g04816 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Seca7g04816 649 MobiDBLite consensus disorder prediction 9 36 - -
Seca7g04816 649 MobiDBLite consensus disorder prediction 1 37 - -
Seca7g04816 649 Gene3D Transferase(Phosphotransferase) domain 1 489 649 - -
Seca7g04816 649 Pfam Ethylene-responsive protein kinase Le-CTR1 80 283 - -
Seca7g04816 649 CDD STKc_MAP3K-like 416 649 - -
Seca7g04816 649 Gene3D Phosphorylase Kinase; domain 1 403 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04816 Seca-Chr7 142295459 142312074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04816 37 649 MAP Kinase Kinase Kinase AT5G03730 58.502 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca7g04816 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04816 K14510 - gmx:100807496 1098.57