Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04796 ATGTATTGCAATTTTAAGGAGCATGCTGCTGAGTATGTTAAGCAGGCAGTTCATGAGGATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTAGAATATTTAAGGGCCCATTTGAAGTATGAGAAGAATCCCAAGATCAAGGAGGCAATAACTCAGAAATTTGCTCAATACTTGAGGAGGGCCGAGGAGATTAGTGCCATTCTTGATGCAGGAGGTAGTAAACCAAACTTGAATAGAGAAGCAGCAGATTCTGTAAGACCAAAGACAAAGACAAATAGTGGAGTAGAGAAAGACAAGGAGGATCCTGAGCAAGCAAAGCTGAGGGCTGGTCTTGATTCTGTTATAATCAAAGAGAAACCAAATGTCAGATGGAGTGACATTGCTGGCCTTGAGAATGCCAAACAGGCATTACAAGAGGCTGTAATATTGCCTGTTAAGTTCCCACAATTTTTCACTGGTAAAAGACAACCATGGAGAGCATTTTTATTGTATGGTCCACCTGGAACAGGGAAATCATTCTTAGCAAAGGCAGTAGCAACAGAAGCAGACTCTACATTCTTCAGTGTTTCATCATCAGATCTTGTTTCTAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAATCTTTTCCAAATGGCTCGTGATAATGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGTCAACGAGGTGAAGGCAATGAAACTGAAGCATCTAGAAGAATCAAAACTGAACTTCTAGTGCAAATGCAGGGTGTGGGACACAATGATCAGAAAGTTCTCATTCTTGCAGCCACAAATACTCCATATGCTCTGGATCAGGCCATTCGACGACGCTTTGACAAAAGGATATACATCCCTCTCCCAGACCTGAAGGCAAGGCAGCACATATTTAAGGTGCATCTTGGAGATACTCCTCATAACCTAACTGAAAAAGATTTTGAAGAATTGGCACAAAAAACAGATGGATTTTCTGGTTCAGATATTTCTGTTTGTGTTAAGGATGTACTATTTGAACCTGTCCGTAAAACACGAGATGCTAAATTCTTCAGGAAAACCTCTAAAGGAATGTGGGTTCCTTGTGAACCTACTAAACGAGGAGCTGTTAATATTAGCCTGGAGGAACTTGATGCACACGGCCTTGCTTCAAAGATTCTTCCACCACCCATCACCAGAGCAGATTTTGATAAAGTATTAGCCAGACAAAAGCCAACTGTTAGTAAAGCTGATCTCGAGGTGCATGAGAGATTCACCCAAGAGTTTGGAGAGGAGGGATGA 1302 0.4055 MYCNFKEHAAEYVKQAVHEDDAGNYKKAFTLYMNALEYLRAHLKYEKNPKIKEAITQKFAQYLRRAEEISAILDAGGSKPNLNREAADSVRPKTKTNSGVEKDKEDPEQAKLRAGLDSVIIKEKPNVRWSDIAGLENAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSFLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDNAPSIIFIDEIDSLCGQRGEGNETEASRRIKTELLVQMQGVGHNDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHIFKVHLGDTPHNLTEKDFEELAQKTDGFSGSDISVCVKDVLFEPVRKTRDAKFFRKTSKGMWVPCEPTKRGAVNISLEELDAHGLASKILPPPITRADFDKVLARQKPTVSKADLEVHERFTQEFGEEG. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04796 433 Gene3D - 298 413 - -
Seca7g04796 433 FunFam vacuolar protein sorting-associated protein 4A 298 413 - -
Seca7g04796 433 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
Seca7g04796 433 SMART smart 2 80 IPR007330 -
Seca7g04796 433 PANTHER AAA DOMAIN-CONTAINING 23 431 - -
Seca7g04796 433 Gene3D - 6 75 - -
Seca7g04796 433 Gene3D - 125 421 IPR027417 -
Seca7g04796 433 SUPERFAMILY MIT domain 4 83 IPR036181 -
Seca7g04796 433 MobiDBLite consensus disorder prediction 80 109 - -
Seca7g04796 433 MobiDBLite consensus disorder prediction 86 109 - -
Seca7g04796 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Seca7g04796 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Seca7g04796 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Seca7g04796 433 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Seca7g04796 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 416 IPR027417 -
Seca7g04796 433 CDD RecA-like_VPS4 124 294 - -
Seca7g04796 433 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Seca7g04796 433 SMART AAA_5 162 298 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04796 Seca-Chr7 141876300 141886349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04796 161 354 Calmodulin-binding Proteins AT3G56690 36.735 1.60e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04796 K12196 - csav:115706151 743.036