LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g04723	ATGAGAATGAATCATAGATGGGTGAACACTATAAAGAGAATTGGACATGTGGATGGAATTGAAGTAGGTGATAAGTTCCAATATAGGGCTGAACTCTGTGTTATTGGCCTCCATAATCAGTTTTCAAGTGGTATTGATTACATGGGAAAGGATATGTACTCTTTGGCCACAAGCATTGTTGTAACCAGTCGCTATTCTAATGTTATGAAGTCCAATGGTTGCTTGGTTTATGAGGGTCAAGGAGGAAATCCTAAAGTAGGAAGTAATGTTTCTCCCCATGATCAGAAATTAGAGGCAGGAAATCTTGCTTTGAGAAATAGCATGGAGGCTAGAAGTCCAGTGAGGGTGATATTGAAGGTTGGTAGAAAATATGAATCTGATGGGATGGACATGTGGAGCAATCCTCAGTACTCATTTATATATGATGGATTGTATTTAGTGAACCAGATGACCGAAGAAAGGGGAGAATATGGAAAACTAGTATTCAAGTTTACTTTGAACAAAATTTCAGACCAACCAACACATGTTGCTCCTGAGGATGTGGTTATGGATGGACGTTTTGCAAGTTCTAGACGGAAATCTAAAGGATCTGTAGCTCAAAAGCATATTGTTCGAATGAATGATGTTTCGAATGGCAAAGAAAAGTTACCTATTCGAGTGGTGACTCCAATTGATCATGGTCAAATGCCTGCATCATTTGAATACATGGTAAACATGGTTTATGGAGATAGGTTAAATCAACCAATTTTATTTGGTTGTGATTGTAGAGAGTCATGTATTGACTGTAAAAAGTGTAGTTGCATTGTTAAGAACTGTGGATCAATGCCATATAACAGTGACAAGAGACTAGCTTATCCCAATAAATCTTCCCTTATATATGAGTGTGGCCCTTCTTGCAAGTGCTCCTCATCTTGCATTAACCGAGTAAGTCAGTGTGGCATTCAGGTTCAGTTAGAAATCTTCAAGACAGAATATAAGGGTTGGGGTGTTAGAACACGCTCTTTCATTCGAAGTGGATGCTTTGTGTGCGAGTTCATTGGAGAAGTCTATCAAAGTCACAATAGAAAAGCTAGATCAAGACCTGATGTTGATGACTACATATTAAGCCTAGGTAGTGTTGGCAAGGGTTTCATTGATGCAACAAATCGTGGAAACATTGCAAGATTTATAAATCATAGCTGTACTCCTAATCTTTGCTTCAAAGATGTAATCTATGATTCCAATAATAAGAGCATTCCCCATAAAATGCTGTTTGCGGTGAAGGACATACCTTCTGGTAGGGAGCTGAGTTATAATTATAATAGCTGTAAGGGAAAAATTATCAAGGTTGGGAACAATGATTGCTATTGTGGTTCACGGGAATGTAATGGACAGATTTACATTTGA	1386	0.381	MRMNHRWVNTIKRIGHVDGIEVGDKFQYRAELCVIGLHNQFSSGIDYMGKDMYSLATSIVVTSRYSNVMKSNGCLVYEGQGGNPKVGSNVSPHDQKLEAGNLALRNSMEARSPVRVILKVGRKYESDGMDMWSNPQYSFIYDGLYLVNQMTEERGEYGKLVFKFTLNKISDQPTHVAPEDVVMDGRFASSRRKSKGSVAQKHIVRMNDVSNGKEKLPIRVVTPIDHGQMPASFEYMVNMVYGDRLNQPILFGCDCRESCIDCKKCSCIVKNCGSMPYNSDKRLAYPNKSSLIYECGPSCKCSSSCINRVSQCGIQVQLEIFKTEYKGWGVRTRSFIRSGCFVCEFIGEVYQSHNRKARSRPDVDDYILSLGSVGKGFIDATNRGNIARFINHSCTPNLCFKDVIYDSNNKSIPHKMLFAVKDIPSGRELSYNYNSCKGKIIKVGNNDCYCGSRECNGQIYI.	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g04723	461	SUPERFAMILY	SET domain	199	442	IPR046341	-
	Seca7g04723	461	Pfam	Pre-SET motif	210	308	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca7g04723	461	SUPERFAMILY	PUA domain-like	5	176	IPR015947	-
	Seca7g04723	461	Gene3D	-	1	182	IPR036987	-
	Seca7g04723	461	Pfam	SET domain	327	434	IPR001214	GO:0005515
	Seca7g04723	461	ProSiteProfiles	SET domain profile.	316	434	IPR001214	GO:0005515
	Seca7g04723	461	ProSiteProfiles	Pre-SET domain profile.	251	313	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca7g04723	461	Coils	Coil	461	461	-	-
	Seca7g04723	461	SMART	set_7	316	440	IPR001214	GO:0005515
	Seca7g04723	461	ProSiteProfiles	Post-SET domain profile.	444	460	IPR003616	-
	Seca7g04723	461	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	2	454	-	-
	Seca7g04723	461	SMART	G9a_1	10	172	IPR003105	-
	Seca7g04723	461	SMART	preset_2	206	300	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca7g04723	461	Gene3D	SET domain	183	443	IPR046341	-
	Seca7g04723	461	ProSiteProfiles	YDG domain profile.	15	168	IPR003105	-
	Seca7g04723	461	Pfam	SAD/SRA domain	14	172	IPR003105	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g04723	Seca-Chr7	140600200	140601890	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g04723	8	459	Su(var)3-9 homologs	AT1G73100	36.382	1.07e-89	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Seca7g04723		SAD_SRA	9.5e-41	CL0178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g04723	-		-	gmx:100807574	565.074