Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04711 ATGCAAAATTCAATTTCAGATGATATCAGTATCAATGATTACTTTCTACTACCACAAGAAGTTCCCATCATCAACAACCTTCAAATTCCTCAACCCTCTTTCTCCTCCAAGCCTCCAAGATCCTCAAATCTAAGCAACCGCAAGCCTTCCTTGAAGAACATCACAATCCCTTCCATAACCACAGGTCTCAAAGCCCTCTCACAACAAATTGAAACAACCACTTATAACCATCAAAATCAAAGTACTTCTTCAGAAAGTGATGGTAACAACACCAAAGAGGACAAACACTACAGAGGAGTTAGAAGAAGGCCATGGGGAAAATTTGCTGCAGAGATTCGTGACCCCAATAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAAGCTTATGATAGAGCTGCTTTTAAGATGAGAGGAAGCAAGGCCATATTGAATTTCCCTCTAGAAGTTGGTGATAATTCTGATGAATCAGTTTCTAGCTGCATCAAGGTTGGTGAGAAAAGGAGAAGAGATGAAGAGAGTGAAGTTAAAAATAATAGCAATAATAAGAAGGTGAAGCAAGAAGAGTGTTGTTCTCCAAAAGGGGTTTCTGCAGCAACTGCTGGGCCTTTAACTCCTTCATGTTGGAAAGGGTTTTGGGACACTGATGTTATGGGCACTATATTTAGTGTACCTCCTTTGTCACCATTATCTCCACTTATGGTAGTTTGA 732 0.4071 MQNSISDDISINDYFLLPQEVPIINNLQIPQPSFSSKPPRSSNLSNRKPSLKNITIPSITTGLKALSQQIETTTYNHQNQSTSSESDGNNTKEDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSKAILNFPLEVGDNSDESVSSCIKVGEKRRRDEESEVKNNSNNKKVKQEECCSPKGVSAATAGPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04711 243 Pfam AP2 domain 96 146 IPR001471 GO:0003700|GO:0006355
Seca7g04711 243 CDD AP2 95 154 IPR001471 GO:0003700|GO:0006355
Seca7g04711 243 MobiDBLite consensus disorder prediction 30 51 - -
Seca7g04711 243 PANTHER DNA-BINDING DOMAIN 60 190 IPR044808 GO:0003700|GO:0009873
Seca7g04711 243 SUPERFAMILY DNA-binding domain 96 156 IPR016177 GO:0003677
Seca7g04711 243 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Seca7g04711 243 Gene3D AP2/ERF domain 95 156 IPR036955 GO:0003700|GO:0006355
Seca7g04711 243 MobiDBLite consensus disorder prediction 173 197 - -
Seca7g04711 243 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
Seca7g04711 243 PRINTS Ethylene responsive element binding protein signature 136 156 IPR001471 GO:0003700|GO:0006355
Seca7g04711 243 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Seca7g04711 243 MobiDBLite consensus disorder prediction 173 207 - -
Seca7g04711 243 MobiDBLite consensus disorder prediction 74 99 - -
Seca7g04711 243 FunFam Ethylene-responsive transcription factor 2 95 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04711 Seca-Chr7 140289411 140290196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04711 41 240 AP2-EREBP Transcription Factor Family AT5G51190 48.529 9.01e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g04711 AP2 2.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04711 K09286 - gmx:100795866 290.041