Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04710 ATGACAACAGCAGAAGAAGAAACTTCAAACTTAGATCTCATATGCCAATATCTCTTAGAGGAAACCTCAAACTCTTTCCTCACCAATCTCTATCCTGTAAAACTTGAAGACCCTTCACCAGATTTTGATTTCAGTTCATATATTTCAGCCAACAGCAGCTTCTGCTCTTTACTTGAAGGCTGTGATTGGGTGAGTTCCCCAAAGTTCCTGAATTCCACAGAAACCAGCCCCTCAAAGGATACCCAGAAATGCAATTCCCCTGAAGCAATTGTAGTGTCAGAGAAGAGAAAGAAAACAGCAGAATGTGATGAGGCAAGGCGTTATAGAGGAGTGAGGAGAAGGCCATGGGGAAAGTTTGCTGCTGAGATACGTGACCCAACAAGGAAAGGGACCAGAGTTTGGTTAGGTACATTTGACACTGAAATTGATGCTGCAAAGGCTTATGATTGTGCTGCTTTCAAGATGAGAGGTCAGAAAGCCATATTGAATTTCCCTTTGGAGGCTGGTGAGTCTGAACCAAAGCCAAATAGTTGTAGCAGGAAAAGGAGAAGACAGAGCACATTGATCAAGCTACCACAAGTTCAAGTTCATCATGAAGAGTCCTGA 606 0.429 MTTAEEETSNLDLICQYLLEETSNSFLTNLYPVKLEDPSPDFDFSSYISANSSFCSLLEGCDWVSSPKFLNSTETSPSKDTQKCNSPEAIVVSEKRKKTAECDEARRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDCAAFKMRGQKAILNFPLEAGESEPKPNSCSRKRRRQSTLIKLPQVQVHHEES. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04710 201 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Seca7g04710 201 PRINTS Ethylene responsive element binding protein signature 147 167 IPR001471 GO:0003700|GO:0006355
Seca7g04710 201 MobiDBLite consensus disorder prediction 166 201 - -
Seca7g04710 201 CDD AP2 115 165 IPR001471 GO:0003700|GO:0006355
Seca7g04710 201 Gene3D AP2/ERF domain 106 167 IPR036955 GO:0003700|GO:0006355
Seca7g04710 201 FunFam Ethylene-responsive transcription factor 2 106 167 - -
Seca7g04710 201 Pfam AP2 domain 107 157 IPR001471 GO:0003700|GO:0006355
Seca7g04710 201 SUPERFAMILY DNA-binding domain 107 167 IPR016177 GO:0003677
Seca7g04710 201 ProSiteProfiles AP2/ERF domain profile. 107 165 IPR001471 GO:0003700|GO:0006355
Seca7g04710 201 PANTHER DNA-BINDING DOMAIN 81 179 IPR044808 GO:0003700|GO:0009873
Seca7g04710 201 SMART rav1_2 107 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04710 Seca-Chr7 140269357 140269983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04710 104 195 AP2-EREBP Transcription Factor Family AT5G07580 65.217 3.95e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g04710 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04710 - - gmx:100305726 266.159