Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04648 ATGGACATGGACATGGACATTCCCCTACCCGAAGAGCTCGAATTGCTCGAATCAAATTATAATCTCCACGAACAAGAAGATCATAATCAGGACTATTACTACCCTCCAGACTTCGACGCAAACCAACCCCAACCCGAACTCGAACCGGAAGAACCGCCGCCAGATCTTGCGCTTCCTTCCGAACCCCAAACCAACAGCCTCAAGCGCTCACGTTCAGGTTCGGGTTCGGATTTGGGTTCAGAGTCTTCCGATGAGGAGAAAAGAGCGAAGGTTAGGGTTCAGGATTCCCCCTCCGACGAGGACTGGCTACGGTACTCTCCTCCTCCTCCCGTTCCGGCGGAAGAAGCGAGCTTCGTGAAGGAGAAGACGTTGTCGCGGTACGCGTCGGAGATCGACGGCGAGTGTATGTCGGTCACCGCGCCCAACGGGAACAGGGTTTACGCCAAGCTGAATCGGTTCCGAGGAGAAGAGCGAGTGACGAAGCTGGATTGCAGAGGATATTCTTCTGATCTTGGTTTAGAACCGATAAATATTCTATTTGAAAAGTTGGAACAAGAGACTTTTGCTAAGACCTTGCAAGCTAGTTCTGAATGCCAAAGTGTTCTTGATGATCCTGAAACACGAACAATTGTCCATGAACAACTTTGGGTGGATAAATATGCTCCAAAGTCGTTTACTGAGCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTGAAACAATGGGATTCTACTGTGTTTGGATCTGAAATTCGAAGTACATCAGAAGATGTTTTGTCTGCTTTGAAACGACATTCTTCTATTGCCCAAAATCAGAAACCTTTGGATTCAAAGTTTCCAAGGACAAACAAAGGTTCCAAATGGAGTAGTAGGAGGTATATGGATTCTAGAAGTAAGGATGAGAGTGGTAATTCAAAGAGTATTCAGGATATCTGGAACACGAAGTCAAGGAATATTGGTCCACCAGAACAGAAGATCCTTCTGCTCTGTGGACCACCAGGTCTTGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGCGGATATCATGTGGTGGAGGTTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAGGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCCGATGCAGGAAAGCAAAGTTTGGGCAAAGGACAACCGGAAAGGAAATCTTCAAAGAAGGGTCGAAAAACAGCATCACTGTCCAGACCTGTGATTTGCATATGTAATGACCTATATGCACCAGCCTTAAGACCATTACGTCAGGTAGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGTGTGGTAAGCAGATTGAAATATATATGTAACAAGGAGGGGATGAAAGCCACTGCCATTGCACTCACTGCTCTAGCAGAATATACAGCTTTAATATGA 1539 0.4535 MDMDMDIPLPEELELLESNYNLHEQEDHNQDYYYPPDFDANQPQPELEPEEPPPDLALPSEPQTNSLKRSRSGSGSDLGSESSDEEKRAKVRVQDSPSDEDWLRYSPPPPVPAEEASFVKEKTLSRYASEIDGECMSVTAPNGNRVYAKLNRFRGEERVTKLDCRGYSSDLGLEPINILFEKLEQETFAKTLQASSECQSVLDDPETRTIVHEQLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSTVFGSEIRSTSEDVLSALKRHSSIAQNQKPLDSKFPRTNKGSKWSSRRYMDSRSKDESGNSKSIQDIWNTKSRNIGPPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQSLGKGQPERKSSKKGRKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICNKEGMKATAIALTALAEYTALI. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04648 512 SMART AAA_5 326 480 IPR003593 GO:0016887
Seca7g04648 512 Pfam ATPase family associated with various cellular activities (AAA) 330 456 IPR003959 GO:0005524|GO:0016887
Seca7g04648 512 Gene3D - 213 475 IPR027417 -
Seca7g04648 512 MobiDBLite consensus disorder prediction 420 442 - -
Seca7g04648 512 Gene3D - 477 510 - -
Seca7g04648 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 509 IPR027417 -
Seca7g04648 512 MobiDBLite consensus disorder prediction 18 115 - -
Seca7g04648 512 CDD AAA 325 419 - -
Seca7g04648 512 MobiDBLite consensus disorder prediction 273 290 - -
Seca7g04648 512 MobiDBLite consensus disorder prediction 291 307 - -
Seca7g04648 512 MobiDBLite consensus disorder prediction 273 310 - -
Seca7g04648 512 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 3 509 - -
Seca7g04648 512 MobiDBLite consensus disorder prediction 60 79 - -
Seca7g04648 512 MobiDBLite consensus disorder prediction 80 99 - -
Seca7g04648 512 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04648 Seca-Chr7 139250042 139259520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04648 327 507 Core DNA Replication Machinery Family AT5G22010 28.061 8.40e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04648 K11269 - gmx:100785041 739.954