Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04608 ATGTCTGGGAACATCAAGGAGGGGAGAGCTTTGGCAAAAGGGTGTTTTGTTATTTTACTTCTATTGATTTTACTTCTTTGTAGCACAGAGGGGTTGAACACAGAGGGACAAATCCTCCTAGAGCTTAAGAATGGACTTCATGATGAACTTAATCTTCTGGGAAATTGGAAGTCTACTGATGAAACCCCATGTGGATGGACAGGTGTAAATTGCAGTTATGAATATAGCAGTAATTATAATCCAGTGGTGGTGTCTCTTAATCTGAGTTCTATGGGTCTTTCTGGAACTCTAAATGCTAGCATTGGGGGTCTGACCCATCTAACTTATCTCAATCTTGCTTTCAATGATCTGATTGGAAATATCCCCAAGGAGATTAGTGAATGTTTGAGTTTGGAGTATATTTACTTGAACAATAACCAATTTGAGGGACCAATTCCTTCTGAATTGAGTAAGCTGTCTGTTTTGAGAAATTTGAATATTTGCAACAATAAACTCTCTGGTGTTATTCCAGATGAGTTTGGAAACTTGTCTTCATTGGTTGAATTAGTGGCCTATAGCAACTTCCTTGTTGGCCCCCTGCCTAATTCCATTGGAAATCTTAAGAATCTTGCTTCTTTCAGAGTTGGGGCAAATAACATTACAGGTACCTTGCCAAAGGAAATTGGCAGATGTAGGAACTTGATACGTCTTGGTCTTGCTCAAAATCAGATAGGAGGGGAGATACCAAGTGAGATTGGGATGCTCAGCAGCTTAAAGGAACTGATTTTATGGGAAAACCAGTTTTCAGGACCTATTCCTAAAGAGCTTGGGAACTGTAGCAGTCTTGAGACCCTTGCTTTATATGGCAATAATCTTATTGGACCTCTTCCTCCAGAGATTGGGAACCTCAAATCATTGAAGTGGTTGTATTTTTACAGAACTAAGTTGAATGGGACCATTCCAAGGGAAATTGGAAATCTTTCTTCAGCTATACACATTGATTTCTCAGAGAACTCTTTAGTAGGTGATATCCCTTCAGAGTTCAGCAAAATAAGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCAGCTAACTGGTGTTATACCAGATGAGTTTAGTAGCTTGAAGAACCTTACAAAGTTAGACCTGTCACTGAATCATCTTACAGGTTCAATTCCACTTGGCTTCCAATACTTGACTCAAATGTTTCAGTTGCAACTTTTTGGCAACTCCCTGAGTGGTATTATTCCTCAGGGACTTGGACTTCACAGTCCTCTTTGGGTGGTTGATTTTTCTGACAACAAATTGACAGGAAGAATACCTCCTCATCTCTGCAGAAATTCTCGCTTGATGTTGTTGAATCTGGCAGGTAATCAACTTTATGGAAATATACCCACAGGGATATTGAACTGTGAATCATTGGCACAATTGGTGTTAACTGGAAACAGGCTTACTGGTGGCTTCCCTTCAGAATTGTGTAAACTGGTGAACCTTACAGCCATTGATTTGAACGAGAACAGGTTCAGTGGTCCACTTCCTCCTGAGATTGCAAACTGCCACAAATTGCAAAGGCTTCATATTGCAAACAATTACTTCATATCCAAGTTGCCTAAGGCAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCTATTCACTGGAAGAATCCCACCTGAAATTTTTTGGTGCCAAAGGCTCCAGAGGCTTGATCTCAGTCAGAATAGGTTTAATGGTTCCTTGCCAAGTGAGATTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCTGACAATAAGCTGTCTGGATACATTCCTGCATCCTTAGGTAATCTGTCTCATCTGAACTGGTTGCTGATGGGTGGCAATTTATTTTCTGGTGAAATACCTTCCCATTTGGGTTCTCTTTCAAGTTTACAGATTGGAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATACCATCTCAGCTTGGCAATCTCAATATGCTTGAATATCTCTTGCTCAATAACAACCATTTGGATGGTGAAATTCCCAGCACCTTTGCAGAACTTTCAAGCTTGTTGGGGTGTAATTTCTCATACAATAACCTCTCTGGACCTATACCTTCCACTAAAATTTTCCAAAGTATGGATGTGAGCAGCTTTATTGGTGGTAATAAAGGCCTTTGTGGTTCACCTCTCGGTGACTGCAACACCAATTCAGGGGAAAGTGTTGAGTCTCCTCGTGCTAAAATTGTCATGATCATTGCAGCTCTTGTTGGTGGTGTTTCTCTCATTTTGATTATAGTAATTTTGTATTATATGAGACGTCCTAGGGAGTCTATTGATTCCTTTAGAGACACTGAGAGTCCTTCCCCAGATTCTGATATCTATTTCCCTCCAAAGGAAGGTTTCACATTTCAAGATCTAATTGAAGCTACAAAAAGATTTCATGAAAGTTATGTTATTGGTAGGGGAGCATGTGGAACAGTTTATAAGGCAGTGATGAAATCTGGTAAGACAATTGCTGTTAAGAAGTTAGCATCCAACAGGGAAGGGAACAACATTGAGAATAGTTTCAGGGCTGAAATATTGACTCTGGGAAGGATAAGGCATAGGAATATAGTGAAGTTGTATGGCTTTTGCTATCACCAAGGTTCCAATCTCCTTCTATATGAGTACATGGAAAGGGGTAGCTTAGGTGAACTATTGCATGGTTCTGCAAGTAATTTGGAGTGGCCAACTCGGTTCATGATTGCCCTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCAAAGATCATTCACCGTGACATAAAGTCTAATAACATTCTTCTTGATGAAAATTTTGAGGCCCATGTTGGTGATTTTGGCTTGGCAAAAGTGATTGATATGCCCCAATCAAAATCAATGTCTGCAGTTGCTGGATCTTATGGGTATATTGCTCCTGAATATGCATATACCATGAAGGTGACAGAAAAGTGTGACATATATAGTTATGGTGTTGTGCTTTTGGAATTGCTAACTGGAAGAACACCAGTTCAGCCACTAGAGCAAGGAGGTGATCTTGTCACATGGGTAAGAAACCATATCCGGGAGCATAACAATACATTGACATCAGAAATACTTGACAGCCGTGTGGATCTTGAAGACCAAATCACCACAAATCACATGCTCACTGTTTTGAAACTTGCTTTAGTATGCACAAGTATGTCTCCTTCTAAGAGGCCATCAATGAGGGAAGTTGTGTCCATGCTCATTGAGTCTAATGAGAAAGAAGGAAACTTAACACTCACTCAAACATACCATGATCTTCCTTCCAAAGATGGCATATGA 3318 0.4005 MSGNIKEGRALAKGCFVILLLLILLLCSTEGLNTEGQILLELKNGLHDELNLLGNWKSTDETPCGWTGVNCSYEYSSNYNPVVVSLNLSSMGLSGTLNASIGGLTHLTYLNLAFNDLIGNIPKEISECLSLEYIYLNNNQFEGPIPSELSKLSVLRNLNICNNKLSGVIPDEFGNLSSLVELVAYSNFLVGPLPNSIGNLKNLASFRVGANNITGTLPKEIGRCRNLIRLGLAQNQIGGEIPSEIGMLSSLKELILWENQFSGPIPKELGNCSSLETLALYGNNLIGPLPPEIGNLKSLKWLYFYRTKLNGTIPREIGNLSSAIHIDFSENSLVGDIPSEFSKISGLSLLFLFENQLTGVIPDEFSSLKNLTKLDLSLNHLTGSIPLGFQYLTQMFQLQLFGNSLSGIIPQGLGLHSPLWVVDFSDNKLTGRIPPHLCRNSRLMLLNLAGNQLYGNIPTGILNCESLAQLVLTGNRLTGGFPSELCKLVNLTAIDLNENRFSGPLPPEIANCHKLQRLHIANNYFISKLPKAIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNRFNGSLPSEIGTLQHLEILKLSDNKLSGYIPASLGNLSHLNWLLMGGNLFSGEIPSHLGSLSSLQIGMDLSYNNLSGRIPSQLGNLNMLEYLLLNNNHLDGEIPSTFAELSSLLGCNFSYNNLSGPIPSTKIFQSMDVSSFIGGNKGLCGSPLGDCNTNSGESVESPRAKIVMIIAALVGGVSLILIIVILYYMRRPRESIDSFRDTESPSPDSDIYFPPKEGFTFQDLIEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEILTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLEQGGDLVTWVRNHIREHNNTLTSEILDSRVDLEDQITTNHMLTVLKLALVCTSMSPSKRPSMREVVSMLIESNEKEGNLTLTQTYHDLPSKDGI. 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04608 1105 Gene3D Ribonuclease Inhibitor 417 731 IPR032675 -
Seca7g04608 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 884 - -
Seca7g04608 1105 SUPERFAMILY Protein kinase-like (PK-like) 783 1080 IPR011009 -
Seca7g04608 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 416 731 - -
Seca7g04608 1105 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Seca7g04608 1105 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Seca7g04608 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 885 1097 - -
Seca7g04608 1105 Pfam Leucine rich repeat 346 405 IPR001611 GO:0005515
Seca7g04608 1105 Pfam Leucine rich repeat 562 620 IPR001611 GO:0005515
Seca7g04608 1105 Pfam Protein kinase domain 808 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04608 1105 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 194 287 - -
Seca7g04608 1105 SMART serkin_6 807 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04608 1105 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 470 1080 - -
Seca7g04608 1105 SUPERFAMILY RNI-like 386 696 - -
Seca7g04608 1105 Gene3D Transferase(Phosphotransferase) domain 1 885 1098 - -
Seca7g04608 1105 SUPERFAMILY L domain-like 34 310 - -
Seca7g04608 1105 Gene3D Phosphorylase Kinase; domain 1 775 884 - -
Seca7g04608 1105 Gene3D Ribonuclease Inhibitor 290 416 IPR032675 -
Seca7g04608 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 288 392 - -
Seca7g04608 1105 Gene3D Ribonuclease Inhibitor 189 289 IPR032675 -
Seca7g04608 1105 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 31 193 - -
Seca7g04608 1105 SMART LRR_typ_2 657 680 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 200 224 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 152 175 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 584 608 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 104 128 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 488 512 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 536 560 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 368 391 IPR003591 -
Seca7g04608 1105 SMART LRR_typ_2 248 272 IPR003591 -
Seca7g04608 1105 SUPERFAMILY L domain-like 295 406 - -
Seca7g04608 1105 ProSiteProfiles Protein kinase domain profile. 807 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04608 1105 ProSitePatterns Serine/Threonine protein kinases active-site signature. 928 940 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04608 Seca-Chr7 138174261 138179388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04608 32 1082 Receptor kinase-like Gene Family AT5G56040 37.395 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca7g04608 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04608 - - gmx:100805792 1842.4