Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04563 ATGCATTATGCAACAAAGACCACACCCAAATCAGTGCCACATAAATTGGAAGACAAAACTTTATCCAAGCAAAGAACTTTGAAGCCTTTTTGCATGTATTGGGGTGGAGTGATGCAAGGCCATATGGGTAGGGGTGTCATAGAGGAAGAGGTATGGAGGAAGGGACCATGGACTGCTGAAGAGGACAGGCTGCTTATTGAGTATGTCAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGGAATGGTAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCTGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGCTTCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTACTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCTTCTGATGCTGCTGAAAAGGCTAAAAATAGGCTCCTCAGGAAGCAGCTATTCCACCAGCAGCAGCAACAACAGTTGCAGCAGCAGGTGCAACAGCAGCAACAACAACTTCAATTCAACTTGGACATGAAAGGGATCATGGCCTTGCTAGAGGACAACAGCCATAGAGTGCCTTATATATCTCAAGGGAGACAAGAAATGGTCAACATGTGTCCAAACACCACAGAAGAGCAGGGGTACTTATACTCTATGCTCAATGGCAACACCTCTGCACCAGAGGCCTCAGCAGATGAAATTTTGTGGGATGGACTGTGGAACTTGGATGATGTTCATGGAAATTTCAGTGTAGCTAATGCTACAAACAAAGCTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 876 0.4498 MHYATKTTPKSVPHKLEDKTLSKQRTLKPFCMYWGGVMQGHMGRGVIEEEVWRKGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKAKNRLLRKQLFHQQQQQQLQQQVQQQQQQLQFNLDMKGIMALLEDNSHRVPYISQGRQEMVNMCPNTTEEQGYLYSMLNGNTSAPEASADEILWDGLWNLDDVHGNFSVANATNKAGLYNLVAPFC. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04563 291 Gene3D - 111 155 - -
Seca7g04563 291 Coils Coil 174 194 - -
Seca7g04563 291 CDD SANT 56 101 IPR001005 -
Seca7g04563 291 CDD SANT 111 152 IPR001005 -
Seca7g04563 291 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Seca7g04563 291 Pfam Myb-like DNA-binding domain 107 151 IPR001005 -
Seca7g04563 291 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Seca7g04563 291 SMART sant 53 103 IPR001005 -
Seca7g04563 291 SMART sant 106 154 IPR001005 -
Seca7g04563 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 105 IPR017930 -
Seca7g04563 291 SUPERFAMILY Homeodomain-like 53 148 IPR009057 -
Seca7g04563 291 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 49 225 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca7g04563 291 FunFam Myb transcription factor 54 106 - -
Seca7g04563 291 Gene3D - 54 106 - -
Seca7g04563 291 FunFam MYB-related transcription factor 111 155 - -
Seca7g04563 291 ProSiteProfiles Myb-like domain profile. 53 101 IPR001005 -
Seca7g04563 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 156 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04563 Seca-Chr7 137368571 137369744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04563 49 291 MYB Transcription Factor Family AT4G13480 59.542 4.76e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g04563 Myb_DNA-binding 8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04563 K09422 - gmx:100795981 457.218