Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04556 ATGGCTGCCACAGCTGCTGCAGGCATAGCCTCCTTGTTTTCTTCTTCCATCAACACTGTCAAATGTCTCCGTTCCAAAAACTGCTCCATAGATCCTCTCATATCAACATCCTCAAACCGCATGTTAGCATCTCTGTCACAGTCCTATCTTACAGAACCTTTGCCTATTGGTAACATCTCACACAAGTTGTGGCTGCCTAGAATTTCTGCTGCTGTTGCACAGGAAGAGGTGGTAGTGGCTGCTGAGGCTGATGATGCTGGTTTTGTTGAAGAGGAGGAAGTGGTAGAAGAAGAAAACACTGAATCCCTTGTTGGCACCAAGCTTTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAGGAATATGGTAGCGCAGAACTAATTGAGGTTCTCTACAACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTAATAGAAAATCTTGATGGAAGAGTGTTCATGGGCCGAACCTTGCGGGTGAACTTTTCTGACAAACCAAAAGCAAAAGAACCATTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACTTGTCATGGTCAGTAACTTCTGAGAGTCTAACAGAAGTTTTCCAAGAATATGGAACTGTGGTTGGAGCTAGGGTCTTATATGATGGGGAAACTGGAAAGTCACGTGGTTATGGCTTTGTTTGCTTTTCTAAAAAATCAGAAATGGAAGCTGCCCTTGCATCCCTGAATGATGTGGTAGAACTAGAAGGAAGAGCAATGCGTGTAAGCTTGGCTCAAGGAAAACGTTCAGAAGGTTAA 846 0.4291 MAATAAAGIASLFSSSINTVKCLRSKNCSIDPLISTSSNRMLASLSQSYLTEPLPIGNISHKLWLPRISAAVAQEEVVVAAEADDAGFVEEEEVVEEENTESLVGTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYNRDTGKSRGFAFVTMSCIEDCNAVIENLDGRVFMGRTLRVNFSDKPKAKEPLYPETEHKLFVGNLSWSVTSESLTEVFQEYGTVVGARVLYDGETGKSRGYGFVCFSKKSEMEAALASLNDVVELEGRAMRVSLAQGKRSEG. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04556 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Seca7g04556 281 PANTHER OS02G0815200 PROTEIN 47 278 - -
Seca7g04556 281 SMART rrm1_1 107 180 IPR000504 GO:0003723
Seca7g04556 281 SMART rrm1_1 198 272 IPR000504 GO:0003723
Seca7g04556 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Seca7g04556 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 269 IPR000504 GO:0003723
Seca7g04556 281 Gene3D - 73 186 IPR012677 -
Seca7g04556 281 SUPERFAMILY RNA-binding domain, RBD 190 278 IPR035979 GO:0003676
Seca7g04556 281 Gene3D - 187 281 IPR012677 -
Seca7g04556 281 SUPERFAMILY RNA-binding domain, RBD 101 188 IPR035979 GO:0003676
Seca7g04556 281 FunFam 28 kDa ribonucleoprotein, chloroplastic 188 279 - -
Seca7g04556 281 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 187 - -
Seca7g04556 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 276 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04556 Seca-Chr7 137222794 137225530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04556 106 277 Eukaryotic Initiation Factors Gene Family AT3G16380 33.511 8.16e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04556 - - aprc:113871254 390.193