Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04546 ATGAACTGCTCCATCTCCGGCGAGGTTCCGGAAGAGCCCGTGGTGTCCAAGAACTCCGGTCTCCTCTTCGAGAAGCGTTTAATCGAGAGACACGTATCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGATGATATTGTACCAATCAAAACAGGCAAGATAGTGAAGCCCCGACCTGTACAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCGTTGGAGCAACAATTGCACACAGCTAGGCAAGAGCTAAGCCATGCTCTATATCAGCATGATGCTGCCTGCCGCGTGATTGCAAGACTGAAAAAGGAACGGGATGAAGCTAGGTCTTTACTTGCACAGGCAGAAAGGCAGTTCCCTGTTTCTGCACCAAATGCCATAACAGCAAATGCCCCCGTCCTTAGCAATGGAAAAAGAGCTGCTGAGGATGAGGAGCTGGCACCTAATGCAAAGAAAATACATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACAGACTGCAATGCTGCTCTTTCCCAGCAGAGGAAAAAGCGCCAGATTCCTGCAACTTTGGCTCCTGTTGAAGCTCTAGAGGCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCTCTTGATATCGTTTATTCCAAGGACTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTCGACCGACCATCAGGACAAATATTAGCTACACTCAGTGGTCACACTAAAAAGGTAACCAGCGTAAAGTTTGTAGCCGAGGGAGAGTCATTCTTAACTGGTTCTGCAGACAAGACAGTTCGATTGTGGCAAGGGTCAGATGATGGTGCATATAACTGCAAGCACATCTTACGGGATCATACAGCTGAGGTGCAAGCTGTCACCGTCCATGCCACCAATAATTACTTTGTGACTGCTTCACTTGATGGCACTTGGTGCTTCTATGAACTGTCTTCAGGAACATGTCTGACTCAGGTTTTGGACTCAAGCTCTGCTGAAGGCTATACATCTGCAGCTTTTCATCCCGATGGTCTCATTCTCGGAACTGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTGAAAAGTCAGGCAAATGTCGCCAAGTTTGATGGGCATGTAGGGCCAGTAACTGCAATATCCTTTTCTGAGAATGGATACTACCTTGCGACTGCAGCTCATGATGGTGTAAAGCTTTGGGATCTACGTAAATTGAAAAACTTCCGGAATTTTGCTCCATATGACTCAGAAACTCCAACGAACTCTGTGGAGTTCGACCACAGTGGATCATACATTGCAATTGCAGGCTCTGATGTAAGGATTCACCAAGTTGCAAATGTGAAATCTGAATGGAACTTTATCAAAAGTTTTCCTGATTTATCTGGAACAGGGAAGGCCACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCGGTTGGATCAATGGACCGGAATCTTCGAATATTTGGCCTGCCTGGTGAAGATACTCCGGCCGAGTCATAA 1575 0.4495 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHVSDYGKCPITGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSAPNAITANAPVLSNGKRAAEDEELAPNAKKIHPGISSSIISELTDCNAALSQQRKKRQIPATLAPVEALEAYTQISSHPFHKTNKQGIISLDIVYSKDLIATGGIDTNAVIFDRPSGQILATLSGHTKKVTSVKFVAEGESFLTGSADKTVRLWQGSDDGAYNCKHILRDHTAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVLDSSSAEGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGPVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYIAIAGSDVRIHQVANVKSEWNFIKSFPDLSGTGKATCVKFGPDSKYIAVGSMDRNLRIFGLPGEDTPAES. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04546 524 FunFam pre-mRNA-processing factor 19 199 515 - -
Seca7g04546 524 Pfam WD domain, G-beta repeat 489 513 IPR001680 GO:0005515
Seca7g04546 524 Pfam WD domain, G-beta repeat 302 337 IPR001680 GO:0005515
Seca7g04546 524 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Seca7g04546 524 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Seca7g04546 524 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Seca7g04546 524 SUPERFAMILY WD40 repeat-like 221 513 IPR036322 GO:0005515
Seca7g04546 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 515 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Seca7g04546 524 SUPERFAMILY RING/U-box 1 53 - -
Seca7g04546 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Seca7g04546 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Seca7g04546 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 351 386 - -
Seca7g04546 524 ProSitePatterns Trp-Asp (WD) repeats signature. 370 384 IPR019775 -
Seca7g04546 524 Coils Coil 115 135 - -
Seca7g04546 524 Gene3D - 201 515 IPR015943 GO:0005515
Seca7g04546 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Seca7g04546 524 CDD RING-Ubox_PRP19 1 54 - -
Seca7g04546 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Seca7g04546 524 SMART WD40_4 300 339 IPR001680 GO:0005515
Seca7g04546 524 SMART WD40_4 343 383 IPR001680 GO:0005515
Seca7g04546 524 SMART WD40_4 386 424 IPR001680 GO:0005515
Seca7g04546 524 SMART WD40_4 212 252 IPR001680 GO:0005515
Seca7g04546 524 SMART WD40_4 255 294 IPR001680 GO:0005515
Seca7g04546 524 SMART WD40_4 473 514 IPR001680 GO:0005515
Seca7g04546 524 SMART WD40_4 427 466 IPR001680 GO:0005515
Seca7g04546 524 CDD WD40 226 513 - -
Seca7g04546 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515
Seca7g04546 524 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Seca7g04546 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Seca7g04546 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Seca7g04546 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04546 Seca-Chr7 137108260 137118134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04546 1 524 U-box Gene Family AT1G04510 74.095 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04546 K10599 - gmx:100527039 998.423