Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04542 ATGCAGATGGATATGTTTGATGATAAATCAATTGTTAATTTGCAAAAAGATGAAGTTCGGAATAGTGAAGTTTCATGTGGGGATAGTTCTAGTTGTGAAGACAGTGATGATACATCTGGTGGAGAAGATAATGATGGTAGTTGTAGTGAAGAAGATAATGATGATAGTTGTAGTGAAGAGGAATTTCATATAGGGAATGAGAAAGTGAGTGATGAGAAAATGAGTGAGGAAAAGGTGAAAGTAGGTGATGTAGAAAAAAGGATTTTAGACTTAACAGGTGATGATATACGGGCATTAGAGTTTGGTTCTGAAGAGCAAGCTTTTTCATTTTACGAGTCATATGCGAAAGCTTTAGGTTTTGTTGTTAGGAAAGATTATGTGAAGAAGGATGTAAGGGGACAGATTGTAATGCGCCAATTTGTTTGTAATAGAGAAGGATTAAGGAATAAAAAACATTTCATGAGGGTTGATAGGAAGAGAGATCATAAACCTATGACCCGCACAAATTGTTTAGCTAAGTTGCGGATCCACTACCATCAAAGGACAGCTAAATGGAGAGTGGTTTCCTTTGAGGAGTGTCATAACCATGAACTTACTCCAGCCAAATTTGTGCATTTGTTTCCTGCATACCGTAAAATGACGGATGCAGACAAAGCTCAAGTGGACAGTTTGCATTCTTTTGGGGTAAGAACATGTCATATAATGGGACGGGATGCACGTGCTGCATTGAGTTATCTACAAGGCAAAGCTGACAATGGAGGGACATTATTTGCTAGATATCAGAATACTAGAGATGATGAAACAACTGAGACGTACAAGTGGGTATTGGAATTTTTTCTGGCTGCAATGTCAAATAAACATCCAAAAGCAGTGGTCACTGATGGAGATGGTGCCATGAGGGAGGCCATAAGGCATGTTTTTCCTGAGGCTTCACATCGTTTGTGTGCATGGCACTTGCATAACAATGCATGTGAAAATATGAAGCACCCTGCATTTTTGGAGGATTTCAAGACGGCTATGTATACAAATTTTTCACCTGAACAATTTGAAGAATATTGGGAGAACATGGTTGAGAAGCATGGTGTTGTGGGAAACAGGTGGGTTTCAAAGACATATGAGAACAAGTCTCTATGGGCGACTGCTTATTTGCGTGATAAGTTTTTTGGTAGGATTAGGACAACATCCCAATGTGAAGCTATTAATTCAGTCATTAAGGTGTATGTTAAGAAAAAAAGCAGCATGGTTGAGTTTATGCATAATTTTCATAGAGCTTTGAGAGAGTACAGAAATAATGAGTTTGTTGCTGATTTTAAAGGGCTTTATTCAGAACCTGTGATGACTACACCACTTGTGAAGATTGAGAAAGAGGCTTCCAAAGTTTATACAGTGGAGATTTTTAGAGAAGTCAAACAACAGATTGAAAAGGCATGCGTATTAAATGTTATTGGAAGAGAAGAAGCTGGAGAGAAGCTAAATTTCAAGCTTAGCAAATATTGCAACCCTGGTTCTGAAAAAATGGTTGTTTACGACACTGCAAATTCAACTTTTAATTGTCAGTGCAGGTTGTTTGAATCCCGCGACATTCCATGTGCTCATATCATTTTTGTGATGAAAAATGAACATATGGAACATATTCCTAGTAACTTGATATTGGCAAGGTGGAAAAAGAATGCGAAGAGAGATTTCCTCTATTCTTCTCAGGCAGATGAAGTAGAAGATGAATTAACCAATACAGTTCGTTACTCTGCTTTCATTGCTGCGTGTAATGCTTTGTTTGAAGCGGGGAGGAATAAGAGTGGTTGTTTCACTGAAATGGTTGATGATATTTACAACCTTACTTTGAAGTATAAAAACAAAGGTGATCAACGGTCCTCACAAAGTGGGGCAGATAACAACATTGGGGAGCCTACTAAGGTGAAAACTAAAGGTGCTACTAAGAAAAAAAAGTTTACAAAGAAGAGGCATTGCTCAAATTGTACAAGCACGGGACACACAATCAGAAGATGCCCAGTGCGTTCTGGTACTGCTGATGCAAGCACATTTGATGATCAGAGATCCCCTTCAGAAGATATTGAAATGAGCATACCAGCTGATCATGAACGTGAGGTTATGGACCATGATGATTCTAAGGAGCAAGTTAATATTTGTAATGATAGAGGAAGTCAAAGTTTGAAGAAAGGGAAAGGGAAAGGGATGCAGAAAATAAGTGTCGGGACCAAAAGGAAGGAAAATAATCGAAAAGATAAGACACTTGTTTTAGATAAAGACCATGTTGCTGAACATGATATGCATACTAGTGGATCGGAGCCTGTCAATGTACTGTTGCAAAACGTAAATCCTGGTGTGCAGGCTGTAAATCCTGGTGTGCAGGCTGTAAATCAAGGTATGCAGACTGTAAATCCTGGTGTGCAGGCTGTAAATCCAGGGGGTGTACCCATGTATCCGGAAATGGGTGCTTCACCTATCTGTCCCCAGAGTATACAAGTCCCTATATTCCCACAAGTCCCTCAACCGCAGTATTACAATTCAATGCCCAATGTGTCATCTTGGAATGGTTTGCTGCAACAAGTTATGAAAAACGGAAGTCAAAGCAGTGAGTTTTAG 2604 0.3909 MQMDMFDDKSIVNLQKDEVRNSEVSCGDSSSCEDSDDTSGGEDNDGSCSEEDNDDSCSEEEFHIGNEKVSDEKMSEEKVKVGDVEKRILDLTGDDIRALEFGSEEQAFSFYESYAKALGFVVRKDYVKKDVRGQIVMRQFVCNREGLRNKKHFMRVDRKRDHKPMTRTNCLAKLRIHYHQRTAKWRVVSFEECHNHELTPAKFVHLFPAYRKMTDADKAQVDSLHSFGVRTCHIMGRDARAALSYLQGKADNGGTLFARYQNTRDDETTETYKWVLEFFLAAMSNKHPKAVVTDGDGAMREAIRHVFPEASHRLCAWHLHNNACENMKHPAFLEDFKTAMYTNFSPEQFEEYWENMVEKHGVVGNRWVSKTYENKSLWATAYLRDKFFGRIRTTSQCEAINSVIKVYVKKKSSMVEFMHNFHRALREYRNNEFVADFKGLYSEPVMTTPLVKIEKEASKVYTVEIFREVKQQIEKACVLNVIGREEAGEKLNFKLSKYCNPGSEKMVVYDTANSTFNCQCRLFESRDIPCAHIIFVMKNEHMEHIPSNLILARWKKNAKRDFLYSSQADEVEDELTNTVRYSAFIAACNALFEAGRNKSGCFTEMVDDIYNLTLKYKNKGDQRSSQSGADNNIGEPTKVKTKGATKKKKFTKKRHCSNCTSTGHTIRRCPVRSGTADASTFDDQRSPSEDIEMSIPADHEREVMDHDDSKEQVNICNDRGSQSLKKGKGKGMQKISVGTKRKENNRKDKTLVLDKDHVAEHDMHTSGSEPVNVLLQNVNPGVQAVNPGVQAVNQGMQTVNPGVQAVNPGGVPMYPEMGASPICPQSIQVPIFPQVPQPQYYNSMPNVSSWNGLLQQVMKNGSQSSEF. 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04542 867 ProSiteProfiles Zinc finger SWIM-type profile. 505 541 IPR007527 GO:0008270
Seca7g04542 867 Pfam MULE transposase domain 265 322 IPR018289 -
Seca7g04542 867 MobiDBLite consensus disorder prediction 620 634 - -
Seca7g04542 867 Pfam FAR1 DNA-binding domain 109 199 IPR004330 -
Seca7g04542 867 MobiDBLite consensus disorder prediction 35 58 - -
Seca7g04542 867 MobiDBLite consensus disorder prediction 59 77 - -
Seca7g04542 867 MobiDBLite consensus disorder prediction 1 77 - -
Seca7g04542 867 MobiDBLite consensus disorder prediction 17 34 - -
Seca7g04542 867 MobiDBLite consensus disorder prediction 670 690 - -
Seca7g04542 867 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 99 582 IPR031052 GO:0006355
Seca7g04542 867 MobiDBLite consensus disorder prediction 620 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04542 Seca-Chr7 136984894 136988189 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g04542 FAR1 8.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04542 - - ccaj:109811679 559.681