Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04522 ATGAGTAGTGAAAACACTAACAGTGCTCCTCCTCATGTATGTCCCTTATGTAGGCGACAACACAGGAGGTGTGATGGGAATTGTGAGTTCGGGCAGTTCTTTCCTGCCAACAGATCTGGTGACTTTGAGAATGCTTTGAGGCTCTTTGGCTTAAATAACATGTTAAGAATCATGCGTGTTGTGGAACCTGAACAAAGACAAGCTGCTGCTGATTCTATACTTAGTGAGGGTACCGCATGGACAAATAACCCAGCTAGTGGTTTACATGGTTATGAGTTACATCTTAGGTCACAAGTTGAATCTTCTTCAAGGGAATTACAAATTGTGAATCAACTTCTTGCAATTTGTAAAGGACAGGTCAATCAACCAAATTTAAACTTTGGTGAAATGCATACTGGACACATGGGCGGTGTGGAACCTCACAAGTTGGGGACAAGTAATTCCCATGAAAGAGGAGAATCAAGCACTATTACACTGAAGGAGAAAAAGGATGAAGAGAAAGAGTCAGAGACACATGGAAAGGGAAAACAACCTATTGTTGATGAAGATGAGTCAGAGGGTAGTGACTAA 570 0.4158 MSSENTNSAPPHVCPLCRRQHRRCDGNCEFGQFFPANRSGDFENALRLFGLNNMLRIMRVVEPEQRQAAADSILSEGTAWTNNPASGLHGYELHLRSQVESSSRELQIVNQLLAICKGQVNQPNLNFGEMHTGHMGGVEPHKLGTSNSHERGESSTITLKEKKDEEKESETHGKGKQPIVDEDESEGSD. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04522 189 MobiDBLite consensus disorder prediction 127 189 - -
Seca7g04522 189 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
Seca7g04522 189 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Seca7g04522 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 157 - -
Seca7g04522 189 MobiDBLite consensus disorder prediction 144 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04522 Seca-Chr7 136734555 136735735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04522 1 100 AS2 family AT2G19820 41.584 7.10e-23 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g04522 LOB 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04522 - - aprc:113866120 150.599