Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04518 ATGGTAAGATCAGAGACTACTAATTCTAGTACTGAAGAAAGTGATCATCATGATCAACAAGAAGTTCAAGATGACTCTGCAGGAACAAAAAGATCTTATGATTGCACATTCTGCAAAAGGGGTTTCACAAATGCACAGGCTTTAGGAGGCCATATGAATATTCACAGGAAAGAGAGAACCAACAAGGCCAAGCAAAACACACCCAACAATAATATTATTGATCAGGAATTCAAAGCTGCCTCTCCTTTTGTTCCACAAGTTTCATCAAACCAACCCTCAAGGTATTACTGCATTTTGGAGACTACTCCAAGGAACCATGACATGTATTTTCAACCATCATCAGTAACTAATAATAGCACTAGAAACTACCCACCTGCTGCATGTACCTTTCAATATGATTTTCTTAACACAAGGAACCAAGAGGTGTTAGGTACCAATTTAAGTCTCCAAATTGGTTCAACTCATGTGGATACTACTGATCAATTTATTGACAAAGATTGTGAAGGGGTGGACTTAGAGCTCAGGCTTGGTCATGATTCATATTCAGACTACTAA 555 0.382 MVRSETTNSSTEESDHHDQQEVQDDSAGTKRSYDCTFCKRGFTNAQALGGHMNIHRKERTNKAKQNTPNNNIIDQEFKAASPFVPQVSSNQPSRYYCILETTPRNHDMYFQPSSVTNNSTRNYPPAACTFQYDFLNTRNQEVLGTNLSLQIGSTHVDTTDQFIDKDCEGVDLELRLGHDSYSDY. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04518 184 Gene3D Classic Zinc Finger 7 93 - -
Seca7g04518 184 MobiDBLite consensus disorder prediction 1 27 - -
Seca7g04518 184 PANTHER OS07G0101800 PROTEIN 13 179 - -
Seca7g04518 184 SUPERFAMILY beta-beta-alpha zinc fingers 30 60 IPR036236 -
Seca7g04518 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Seca7g04518 184 MobiDBLite consensus disorder prediction 9 27 - -
Seca7g04518 184 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04518 Seca-Chr7 136621575 136622129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04518 33 121 C2H2 Transcription Factor Family AT5G43540 45.745 1.29e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g04518 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04518 - - mtr:25483021 207.608