Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04517 ATGTTAAAAGCATCAGCATCTGGACTGTTAATTGTGTTGCTCCTCTTCAAATGTGTATCTGCAACAGATAATGGATTTCCCAAATGTAACTGTGATGATGAGGCCAGTTGGTGGACAATTGAGAGCATTCTGGAGTGCCAGAAAGTTGGTGACTTTCTCATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTTCTTTATTTTGTTAGCTGCTCAAATGTTCCATTCAAATGGGTCCTCATTCAGTTCATTGCCTTCATTGTGCTTTGTGGAATGACACATTTGCTGAATGGATGGACTTATGGCCCTCATTCTTTTCAACTCATGGTGGCACTCACTGTCTTAAAGATTCTCACTGCTTTGGTATCATGTGCCACTACCATAACCCTCTTGACTCTGATCCCTTTGCTTCTAAAAGTGAAGGTCAGAGAATTCATGCTGAAGAAAAAGACTTGGGATCTTGGAAGAGAGGTTGGTATTATAATGAAACAAAAAGAGGCTTCAATGCATGTAAGAATGCTTACTCATGAGATTCGCAAGTCACTTGATAAGCATAAGATTCTTTACACCACATTGGTTGAGCTGTCTAAAACTCTTGGTTTGCAAAATTGTGCAGTGTGGATGCCTAATGTTGATAAAACTGAGATGAACCTCACACATGAATTGAATGGGAGGAACATTAACTTTTCTATACCAATTACTGATCCAGATGTTGTAAGGATCAAGGGGAATGATGTAGTAAACATAATTAATGCTGATTCAGTGCTTGCTGCTGCTAGTAGTGGAATTTCTGGTGAGGCAGGACCAGTTGCTGCAATCAGAATGCCAATGCTTCGCGTTTGCAATTTCAAAGGAGGGACACCTGAGTTAACACAGGCATGTTATGCCATATTGGTTTTGGTACTTCCTAGTGGAGAGCCTAGATATTGGAGCAGTCAAGAGCTGGAGATAATCAAGGTGGTTGCTGATCAGGTTGCTGTGGCTCTGTCTCATGCTGCAATTCTTGAAGAGTCTCAACTTATGAGGGAGAAGTTGGAGGAGCAAAATCGAGCTCTGCAGCAGGAAAAGATGAATGCTATGATGGCAAGCCAGGCCAGGGCTTCATTTCAGAAGGTCATGAGTAATGGAATGAGAAGGCCAATGCACTCAATTTTGGGTTTGCTTTCAATGGTGCAAGATGAGAATTTAAAGAATGATCAGAAGCTTATTGTGGATTCAATGTTAAGGACCAGCAATGTTTTGTCAAACTTGATAAATGATGCCATGGACAACTCAGATAGGGATGATGGGAGATTTCCTTTGGAGATGAAGCCTTTTGGGTTACATGGGATGATAAAAGAAGCAGCTTGTCTTGCCAAGTGCATGTGTGTTTATAGGGGTTTTGGTTTTAAGGTTGAGGTTGATAAGTCTTTGCCTAACAATGTTGTAGGTGATGAAAAGAGGGTTTTTCAAGTGATTTTGCATATGGTTGGGAGTGTAATCAATGGTGACCATGGGGGAGGAATTCTTGTACTCAGAGTTTTTGCAGAAACTGGAAGTCAAGGAAGGAATGATCAAGGATGGGCAACCTGGAGACCAAGCTCATCTAGTGGGGATGTAAATATTAGATTTGAAATAGGAATCAATAACAATGGTTCTGAATCAGAGAACTCGGTTTCTTCAGGGCAGCTTGTGGGTTGGAAGCATACCAGTGATAGGGTTGAGGAAAGATTGAGCTTCAGCATTTGCAAAAGGATAATCCAGTTGATGCAAGGGAACATTTGGTTAATACCAAATGCTCAAGGTTTTCCTCAAGCCATGGCCCTTGTTCTTCGATTCCAATTAAGGCGATCAATTGCCTTAACCATACCTGAACCTGGAGAGAGTTCAGAGCCTTCCAATTCAAATTCTTTCTTCAGAGGTCTGCAAGTGTTGTTGGCCGACAATGATGATGTAAATAGAGCAGTGACCCAAAAGTTGCTTCAGAAACTAGGTTGTGTTGTAACTTCTGTTTCTTCAGGATTTGAATGCCTCAGTGTTATTGGACCTGCTGGATCTTCCTTTCAAGTTGTTCTTTTGGATCTTCACATGCCTGAATTAGATGGATTTGAAGTTGCTACAAGGATTCGCAAATTTAGAAGCCGAAATTGGCCTTTAATCGTTGCGTTGACAGCAAGCACAGAAGATGATTTGTGGGAAAAATGCATGCAAATTGGCATTAATGGAGTTATCAGAAAGCCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATCCTGATGCAGGGAAACAATGTCCTGTGA 2286 0.4138 MLKASASGLLIVLLLFKCVSATDNGFPKCNCDDEASWWTIESILECQKVGDFLIAVAYFSIPIELLYFVSCSNVPFKWVLIQFIAFIVLCGMTHLLNGWTYGPHSFQLMVALTVLKILTALVSCATTITLLTLIPLLLKVKVREFMLKKKTWDLGREVGIIMKQKEASMHVRMLTHEIRKSLDKHKILYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNINFSIPITDPDVVRIKGNDVVNIINADSVLAAASSGISGEAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLVLPSGEPRYWSSQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQEKMNAMMASQARASFQKVMSNGMRRPMHSILGLLSMVQDENLKNDQKLIVDSMLRTSNVLSNLINDAMDNSDRDDGRFPLEMKPFGLHGMIKEAACLAKCMCVYRGFGFKVEVDKSLPNNVVGDEKRVFQVILHMVGSVINGDHGGGILVLRVFAETGSQGRNDQGWATWRPSSSSGDVNIRFEIGINNNGSESENSVSSGQLVGWKHTSDRVEERLSFSICKRIIQLMQGNIWLIPNAQGFPQAMALVLRFQLRRSIALTIPEPGESSEPSNSNSFFRGLQVLLADNDDVNRAVTQKLLQKLGCVVTSVSSGFECLSVIGPAGSSFQVVLLDLHMPELDGFEVATRIRKFRSRNWPLIVALTASTEDDLWEKCMQIGINGVIRKPVLLQGIASELRRILMQGNNVL. 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04517 761 ProSiteProfiles Response regulatory domain profile. 636 754 IPR001789 GO:0000160
Seca7g04517 761 Pfam GAF domain 185 329 IPR003018 GO:0005515
Seca7g04517 761 Gene3D - 162 330 IPR029016 -
Seca7g04517 761 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 351 431 IPR036097 GO:0000155|GO:0007165
Seca7g04517 761 Gene3D - 429 605 IPR036890 -
Seca7g04517 761 SMART REC_2 635 754 IPR001789 GO:0000160
Seca7g04517 761 PIRSF Ethylen_sen_hybr_HK 1 761 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Seca7g04517 761 Coils Coil 335 362 - -
Seca7g04517 761 Pfam Response regulator receiver domain 637 744 IPR001789 GO:0000160
Seca7g04517 761 CDD HisKA 363 425 IPR003661 GO:0000155|GO:0007165
Seca7g04517 761 Gene3D - 331 428 - -
Seca7g04517 761 FunFam Ethylene receptor 4 332 426 - -
Seca7g04517 761 SUPERFAMILY CheY-like 632 754 IPR011006 -
Seca7g04517 761 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 592 IPR036890 -
Seca7g04517 761 SMART HisKA_10 365 430 IPR003661 GO:0000155|GO:0007165
Seca7g04517 761 SUPERFAMILY GAF domain-like 186 332 - -
Seca7g04517 761 Gene3D - 618 755 - -
Seca7g04517 761 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 26 756 - -
Seca7g04517 761 CDD REC_ETR-like 635 750 - -
Seca7g04517 761 CDD HATPase_ETR2_ERS2-EIN4-like 471 604 - -
Seca7g04517 761 FunFam Ethylene receptor 633 757 - -
Seca7g04517 761 SMART gaf_1 183 339 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04517 Seca-Chr7 136519603 136522582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04517 23 754 Miscellaneous Gene Families AT3G04580 59.170 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca7g04517 GAF 3.3e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04517 K14509 - gmx:100802948 1266.52