Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04508 ATGATATATTTTTATCTATGGCCTAAACATTCTGTAGCAGAAGGAGGAGGAACATTCCCAAAGGTCCTCTCCCCGTCGAAGAACGACAATGTCGTTTTCGTAAACGGCAAACCCGTCCTCGTCGCCCAGCCCCTCACGGTAGTCCGTGCCCTAAGCAGCACCGGCGGCGCCCGCGTTCTAGCGGCGCCGCTGAACCCCGACGAGTTCGACGCGTCCAAAACGCCGTTGATTAAAGTGAAAGAGGAGCCGTATGAAGAAGAGAAAGCAAAAACGGTCATCAACGTGGCTCAACCCGGACGGTCTATGCTTTCGTTCGACGATTTTCTTAAGGCTACGAACACAAAAGTCGCATCCGAAGAGGAGTGGCTGAAATCAATGGAAGTAGAACCACCGGTTCAAGCGATGGAAGGAGCTGTCGATGCTGACAGGGTTTGTGCAGAGAATGAAACAGTTGGGGATGAATTGGTTGAAGAATCACCGATTCAGGCTATGGAAGAGGTTTTCGCTGAGAAGGAGGCGGTCGAGGTTGAACCGATTGAAGAACCACCGGTTCAAGCGATGGAAGAGGTTGTCGATGTGGACAAGGTTTGTGCTGAGGAAGAGGCGGTCGAGGTTCAACCGGTTGAAGAACCACCGGTTCAAGCGATTGTAGAGGTTGTCGATGTGGACAAGGTTTGTGCGAAGAAAGAAGCGGCTAGGGATGAAGTGAAGGTGGTGAACAAGGAGGCGGTTGAAGAGAAGATCCCGAACCTTGAGGATGGTGAGTTTCCTAAAGAACGTGGGTGGTCGTTGTTGGGAAGGAAGGTGGAGGTTGCGATTTCCACTGCCAAAGGAGTGAAGAGATTGGTGGACAATGAGATTATTCATTTCAATTTCCCTCTCCAATATTCCAATTACAAGTTTCAATGGATAGTTCGCATCTCAACTAAGCGTTCTGGAGAGGTACTACTATTACTTATTGCAATGTTTAGGAATTTGAATTCATGGTGCTTTGTTGTTGTGGTTGAATTCAACTTTTCAGGTTGGGAGGATGCCGATGGAATGGGCAAAAACTGTCATTCCACCTGCATCCTTTCTGGTCAGCCTACAATATATGCAACGAGTAAAAGGACAATTTATGTTAATGTTTTCACCGGTGAGGGTATGATTAAATTTCCCAAAGCAACACAGATGGCAAGAGGAGGGATTCTAGCGGATGCAATGGGACTTGGAAAGACGGTTATGACAATTGCTCTGATTCTAAGTAATTCAGGCAGAGAAAGGTCGGAAAACAGCGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGAGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTAGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTACATTATGGTGGGAGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGATGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATACAAAAGTGATGGGGAGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTTGTGCTAGATGAAGCTCATACCATAAAAGCCCAAAGAAGCCAGGTTGCCCAGTCTGCATTTGCTTTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGGTTTGCCTTTCTAATTATCAAGCAAATATTATTCGTTTAATTGTTATACTGAGAATACATTGGAGGATTTGTTTTAGCTTGTTATGTTTCCTGCGTGTCGAACCTTGGTGCAGCTGGGAATGGTGGAGTAAGTTGGTTCAAAGGCCTTTTGAGAATGGTGATCCAAGAGCTATAAAATTGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCTTGCCACCAACTGATATTCAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGCGACTTCTATGGTGCCCTCTTCGCTAGATCTAAACTAAGTTATGCTGTAATGGCTTTGAAGCAGCGGGGTATTAAAGCTAAATATCTTGGAAGCGCTCAGAAGGATTTCACTATTCAGACTAAAGTTGAGCGTGGTCAATTTGACATTTTGTTCATGACTTCTGAGAAGGCATGCACAATTCCTACCAGGAGCTGGAGGGACCATAGTGATGGTGATCCAAGAGCTATAAAAATGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCCTGCCACCAACTGATATACAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGCGACTTCTATGATGCCCTCTTCGCTAGATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTAACCGCTATGCCAATATCCTCGACCTACTAATGCAGTTGAGGCGGTGCTGTAACCATCCATTTTTGGTTATGTGCGGAAGTGATTCCCAGAAATATGCAGACTTGAGCAGACTTGCAAGAAGATTCTTCCAGTCGAATACCGAATCATCCGATATATGCGGTCAAAGGGATCCATTACAACTTGAGGAGTTGAACAAACTAGCTAGTAGATTCTTTCTGAAGTCTGATTCTGCTTCGCACTCTATCCAATCTCGTGGTTACATTGATGAGGTTTTGGAGCATATTCAAAAGGGTGAAACATTGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTGTTTACACCATGTGCACATAGGTTCTGTAGAGAATGCCTATTCAATTGCTGGGGGACCTCAATGGGTGAAGTCATCTTCTGACGAGAAAAGTATTGTCTTCAGTCAATGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGTAGAGGAATAGGTTATTTAAGATTTGAAGGGAAATTGTCTCAGAAACAGAGGGAGAAGGTTCTGAAAGAATTTAATGAAACAAGTGAGAAAAGGGTTTTGTTGATGTCACTAAGAGCTGGTGGTGTTGGGTTGAACTTAACTGCAGCTTCTAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATAGGACAAAAAAGAAGAGTTATTGTTAGGAGATTCATCGTGAAGGACACAGTGGAAGACCGATTGCAACAAGTTCAAGCCAGGAAACAGAGGATGATATCTGGTGCCCTCACCGATGATGAGGTTCGGTCTGCTAGGATTAAAGACCTAAAAATGCTATTCTCATGA 3318 0.4421 MIYFYLWPKHSVAEGGGTFPKVLSPSKNDNVVFVNGKPVLVAQPLTVVRALSSTGGARVLAAPLNPDEFDASKTPLIKVKEEPYEEEKAKTVINVAQPGRSMLSFDDFLKATNTKVASEEEWLKSMEVEPPVQAMEGAVDADRVCAENETVGDELVEESPIQAMEEVFAEKEAVEVEPIEEPPVQAMEEVVDVDKVCAEEEAVEVQPVEEPPVQAIVEVVDVDKVCAKKEAARDEVKVVNKEAVEEKIPNLEDGEFPKERGWSLLGRKVEVAISTAKGVKRLVDNEIIHFNFPLQYSNYKFQWIVRISTKRSGEVLLLLIAMFRNLNSWCFVVVVEFNFSGWEDADGMGKNCHSTCILSGQPTIYATSKRTIYVNVFTGEGMIKFPKATQMARGGILADAMGLGKTVMTIALILSNSGRERSENSDWESIYDSIITNKRKHVNSSCKVEGSTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGSRTNSAELISGYDVVLTTYGVLSAAYKSDGENSIYHRVQWHRVVLDEAHTIKAQRSQVAQSAFALSSHCRWCLTGTPLQVCLSNYQANIIRLIVILRIHWRICFSLLCFLRVEPWCSWEWWSKLVQRPFENGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYGALFARSKLSYAVMALKQRGIKAKYLGSAQKDFTIQTKVERGQFDILFMTSEKACTIPTRSWRDHSDGDPRAIKMVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYDALFARSKVQFDQYVAQGKVLNRYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLSRLARRFFQSNTESSDICGQRDPLQLEELNKLASRFFLKSDSASHSIQSRGYIDEVLEHIQKGETLNALYVWNHQMILCLHHVHIGSVENAYSIAGGPQWVKSSSDEKSIVFSQWTSFFDLLENPLRSRGIGYLRFEGKLSQKQREKVLKEFNETSEKRVLLMSLRAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQARKQRMISGALTDDEVRSARIKDLKMLFS. 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04508 1105 SMART helicmild6 969 1052 IPR001650 -
Seca7g04508 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 636 IPR027417 -
Seca7g04508 1105 CDD DEXDc_SHPRH-like 391 636 - -
Seca7g04508 1105 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 386 580 IPR014001 -
Seca7g04508 1105 Gene3D - 774 1105 IPR027417 -
Seca7g04508 1105 Pfam SNF2-related domain 370 687 IPR000330 GO:0005524|GO:0140658
Seca7g04508 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 1096 IPR027417 -
Seca7g04508 1105 Gene3D - 379 637 IPR038718 -
Seca7g04508 1105 SMART ultradead3 382 586 IPR014001 -
Seca7g04508 1105 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 945 1101 IPR001650 -
Seca7g04508 1105 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 740 1104 - -
Seca7g04508 1105 Pfam Helicase conserved C-terminal domain 952 1052 IPR001650 -
Seca7g04508 1105 CDD SF2_C_SNF 953 1063 - -
Seca7g04508 1105 Pfam SNF2-related domain 740 836 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04508 Seca-Chr7 136248888 136256261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04508 371 682 RAD5 or RAD16-like Gene Family AT5G43530 61.270 9.17e-127 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g04508 SNF2_N 1.8e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04508 K15505 - psat:127103070 461.07