Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04505 ATGGCTTCTATGATCAAAGGAGAATCTTCCAAAACAAAACCGCTGATCGATTATTTCCAAGCCAAGTTGGATCCATCTAAGGCTGTTATACCTATTGATAGGTGTTTTCTTCATTTGTGGGAAAATGTATTCAAAGAACGAGATTTTTACTTGAGAGATCCTGAGCAGAATTGTCATGTTGTGAGAACTATTAGGAATAGAAATGGTGATTATGAATTTTACCCGGGAGTGCAGTACATGCCAATTCTTGCTAGAATTGTTCGAACAATTCTTAAAGAAAACCAACATATGGTGTATATTTTTGATGAGGAGGGAAAAGCTTTTATTGTTGATCTGATTCCTAGACGAAGGAGTTCAGAATGCTTCCTAGGAAAGGGATGGTATGAGTATGTTAAGCAGAAAAATCTGAAGGAGGGAGACAGAGTGAAGTTAACATTCGGTTATAGCCATAGGGACATTGATTCCCATATAATTAAGGGTTGA 483 0.3706 MASMIKGESSKTKPLIDYFQAKLDPSKAVIPIDRCFLHLWENVFKERDFYLRDPEQNCHVVRTIRNRNGDYEFYPGVQYMPILARIVRTILKENQHMVYIFDEEGKAFIVDLIPRRRSSECFLGKGWYEYVKQKNLKEGDRVKLTFGYSHRDIDSHIIKG. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04505 160 SUPERFAMILY DNA-binding pseudobarrel domain 80 146 IPR015300 -
Seca7g04505 160 Gene3D - 76 159 IPR015300 -
Seca7g04505 160 Pfam B3 DNA binding domain 92 146 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04505 Seca-Chr7 136172687 136173581 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g04505 B3 9.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04505 - K09287 psat:127080863 43.8986