Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04504 AATAGAACCAACAAGATTGTTGAAGCTCAGGTCAATAACAGTGATGGCAGGGCAATCACCAATGTCAACAGGTTAGGTAAAGGATTATACTTCGAGGCTTCTTCGATTTCGCTCTGTTGCTCGCAGAGCTTTTTTCCTGTTTCGGTTAAGGAACCTGATCTCGGATCTTTTCCCCTTAAATCTTCTCGCGTCAATCTACTGTTGTTGTTAGGTAAAGGATTATACTTCGAGGCTTCTTCGATTTCGCTCTGTTGCTCGCGGAGCTTTTTTCCTGTTTCGGTTAAGGAACCTGATCTCGGATCTTTTCCCCTTATATCTTCTCGCGTCAATCTACTGTTGTTGGTAAAGGATTATACTTCGAGGCTTCTTCGATTTCGCTCTGTTGCTCGCGGCTTTTTTCCTGTTTCGGTTAAGGAACCTGATCTCGGATCTTTTCCCCTTAAATCTGCTCGCGTCAATCTACTGTTGTTGTTAGGTAAAGGATTATACTTCGAGGCTTCTTTGATTTCGCTCTGTTGCTCGCGGGAACCTGATCTCGGATCTTTTCCCCTTAAATCTGCTCGCGTCAATCTACTGTTGTTGGTAAAGGATTATACTTCGAGGCTTCTTCGATTTCGCTCTGTTGCTCGCGGCTTTTTTCCTGTTTCGGTTAAGGAACCTGATCTCGAATCTTTTCCCCTTAAATCTGCTCGCGTCAATCTACTGTTGTTGGGCTTAATCAATATAGAACAGAAGTTTTGGGAAAAGTTTCGTGATCAGATTCCATCAGAGGTTTTTTTTACTGATCCTGCTGGAAATACATTTCCAGTAGGAATTTCTTTGAAAGGTGATAGGGCTGTGTTTAAACGAAATGTCGATACAATGACTAGATTTTATGGGCTGAGTCGAAAGCACAGTATGCTTTGTAAGTATAAGGGTGGTAACCAGTTTTATATATTGGTTGGTAATAGATATGGGGTTGAAATTAAGTATCCTGAAAGGAGGAACCCTGATGTAATTGTAGTATCTTCTGATGACTATGAAAGTGATCCTGAGGAGTACCCAGGATGGACTGTCACTTTGACAAGACCTGCTGCATCTGGGTCTAATCCATTGCTTATCCCTGCAAAATATGTCAGAAGAGTTCTTTCCAAAAATCAAAAGACTTTGACTATAAATGATGTAAATGGCGACAAAATAGGTTGTAAAATTTTGAAACCAAAAAGAAGAACAAATGAGCGATATCTTGGGAGGGGTTGGTACAACTTCTGTCGAAAGAAGAATTTCAAGGAGGGGGAAGAGCTTTATTTTTATACCAAGTGGGATGCTAAAAATTTGTGGGTCAAAAAGCTCAATAGTTAG 1341 0.4079 NRTNKIVEAQVNNSDGRAITNVNRLGKGLYFEASSISLCCSQSFFPVSVKEPDLGSFPLKSSRVNLLLLLGKGLYFEASSISLCCSRSFFPVSVKEPDLGSFPLISSRVNLLLLVKDYTSRLLRFRSVARGFFPVSVKEPDLGSFPLKSARVNLLLLLGKGLYFEASLISLCCSREPDLGSFPLKSARVNLLLLVKDYTSRLLRFRSVARGFFPVSVKEPDLESFPLKSARVNLLLLGLINIEQKFWEKFRDQIPSEVFFTDPAGNTFPVGISLKGDRAVFKRNVDTMTRFYGLSRKHSMLCKYKGGNQFYILVGNRYGVEIKYPERRNPDVIVVSSDDYESDPEEYPGWTVTLTRPAASGSNPLLIPAKYVRRVLSKNQKTLTINDVNGDKIGCKILKPKRRTNERYLGRGWYNFCRKKNFKEGEELYFYTKWDAKNLWVKKLNS. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04504 446 Gene3D - 337 442 IPR015300 -
Seca7g04504 446 PANTHER B3 DOMAIN-CONTAINING 228 431 - -
Seca7g04504 446 Pfam B3 DNA binding domain 352 442 IPR003340 GO:0003677
Seca7g04504 446 SUPERFAMILY DNA-binding pseudobarrel domain 346 438 IPR015300 -
Seca7g04504 446 ProSiteProfiles B3 DNA-binding domain profile. 350 446 IPR003340 GO:0003677
Seca7g04504 446 SUPERFAMILY DNA-binding pseudobarrel domain 233 314 IPR015300 -
Seca7g04504 446 CDD B3_DNA 351 442 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04504 Seca-Chr7 136157710 136172075 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g04504 B3 1.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04504 - K23703 cpap:110808826 56.9954