Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04501 ATGATTAAATTTCCCAAAGCAACACAGATGGCAAGAGGAGGGATTCTAGCGGATGCAATGGGACTTGGAAAGACGGTTATGACAATTGCTCTGATTCTAAGTAATTCAGGCAGAGAAAGGTCGGAAAACAGCGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGAGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTAGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTACATTATGGTGGGAGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGATGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATACAAAAGTGATGGGGAGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTTGTGCTAGATGAAGCTCATACCATAAAAGCCCAAAGAAGCCAGGTTGCCCAGTCTGCATTTGCTTTGTCCTCACACTGCCGCTGGTGGAGTAAGTTGGTTCAAAGGCCTTTTGAGAATGGTGATCCAAGAGCTATAAAATTGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCTTGCCACCAACTGATATTCAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGCGACTTCTATGGTGCCCTCTTCGCTAGATCTAAACTAAGTTATGCTGTAGCTTGTTATCTTTAA 777 0.4324 MIKFPKATQMARGGILADAMGLGKTVMTIALILSNSGRERSENSDWESIYDSIITNKRKHVNSSCKVEGSTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGSRTNSAELISGYDVVLTTYGVLSAAYKSDGENSIYHRVQWHRVVLDEAHTIKAQRSQVAQSAFALSSHCRWWSKLVQRPFENGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYGALFARSKLSYAVACYL. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04501 258 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 5 186 IPR014001 -
Seca7g04501 258 Gene3D - 4 177 IPR038718 -
Seca7g04501 258 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 176 250 - -
Seca7g04501 258 CDD DEXDc_SHPRH-like 10 206 - -
Seca7g04501 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 206 IPR027417 -
Seca7g04501 258 Pfam SNF2-related domain 6 175 IPR000330 GO:0005524|GO:0140658
Seca7g04501 258 SMART ultradead3 1 229 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04501 Seca-Chr7 136146898 136148682 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04501 2 252 RAD5 or RAD16-like Gene Family AT5G43530 57.895 1.64e-109 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g04501 SNF2_N 1.9e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04501 K15505 - psat:127103070 381.719