Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04499 ATGCAACACAAACAGGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTAACCGCTATGCCAATATCCTCGACCTACTAATGCAGTTGAGGCGGTGCTGTAACCATCCATTTTTGGTTATGTGCGGAAGTGATTCCCAGAAATATGCAGACTTGAGCAGACTTGCAAGAAGATTCTTCCAGTCGAATACCGAATCATCCGATATATGCGGTCAAAGGGATCCATTACAACTTGAGGAGTTGAACAAACTAGCTAGTAGATTCTTTCTGAAGTCTGATTCTGCTTCGCACTCTATCCAATCTCGTGGTTACATTGATGAGGTTTTGGAGCATATTCAAAAGGGTGAAACCATTGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTGTTTACACCATGTGCACATAGGTTCTGTAGAGAATGCCTATTCAATTGCTGGGGGACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAAGAGCTCAAGAAAGATGATCTGATTACTTCTCCATCAGAATGCCCGTTCGAGGTTGATACTGAGAGCAATTTGACAGTGTCTTCAAAGGTTTCAAAGCTATTGGATTTCTTGCAACGTATTCAGAAGTCATCTTCTGACGAGAAAAGTATTGTCTTCAGTCAATGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGTAGAGGAATAGGTTATTTAAGATTTGAAGGGAAATTGTCTCAGAAACAGAGGGAGAAGGTTCTGAAAGAATTTAACGAAACAAGTGAGAAAAGGGTTTTGTTGATGTCACTAAGAGCTGGTGGTGTTGGGTTGAACTTAACTGCAGCTTCTAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATAGGACAAAAAAGAAGAGTTATTGTTAGGAGATTCATCGTGAAGGACACAGTGGAAGACCGATTGCAACAAGTTCAAGCCAGGAAACAGAGGATGATATCTGGTGCCCTCACCGATGATGAGGTTCGGTCTGCTAGGATTAAAGACCTAAAAATGCTATTCTCATGA 1077 0.4104 MQHKQVQFDQYVAQGKVLNRYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLSRLARRFFQSNTESSDICGQRDPLQLEELNKLASRFFLKSDSASHSIQSRGYIDEVLEHIQKGETIECSICMESPDDPVFTPCAHRFCRECLFNCWGTSMGGKCPICRQELKKDDLITSPSECPFEVDTESNLTVSSKVSKLLDFLQRIQKSSSDEKSIVFSQWTSFFDLLENPLRSRGIGYLRFEGKLSQKQREKVLKEFNETSEKRVLLMSLRAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQARKQRMISGALTDDEVRSARIKDLKMLFS. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04499 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 173 IPR013083 -
Seca7g04499 358 CDD SF2_C_SNF 187 316 - -
Seca7g04499 358 SMART helicmild6 222 305 IPR001650 -
Seca7g04499 358 Pfam Helicase conserved C-terminal domain 193 305 IPR001650 -
Seca7g04499 358 ProSiteProfiles Zinc finger RING-type profile. 121 161 IPR001841 -
Seca7g04499 358 ProSitePatterns Zinc finger RING-type signature. 136 145 IPR017907 -
Seca7g04499 358 SMART ring_2 121 160 IPR001841 -
Seca7g04499 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 349 IPR027417 -
Seca7g04499 358 Pfam Zinc finger, C3HC4 type (RING finger) 120 165 - -
Seca7g04499 358 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 4 357 - -
Seca7g04499 358 Gene3D - 1 358 IPR027417 -
Seca7g04499 358 SUPERFAMILY RING/U-box 110 167 - -
Seca7g04499 358 CDD RING-HC 120 160 - -
Seca7g04499 358 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 194 354 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04499 Seca-Chr7 136086365 136088423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04499 2 357 RAD5 or RAD16-like Gene Family AT5G43530 63.764 5.42e-154 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04499 K15505 - gmx:100806677 579.326