Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04498 ATGGCGGAACATTCTGTAGCAGAAGGAGGAGGAACATTCCGCAAGGTCCTCTCCCCGTCGAACAACGACAATGTTGTCTTCGTAAACGGCAAACCCGTCCTCGTCGCCCAGCCCCTCACAGTGGTCCGTGCCCTAACCAGCACCGGCGGCGCCCGTGTTCTAGCGGCGCCGCTGAACCCCGACGAGTTCGACGCGTCCAAAACGCCGATGATCAAAGTGAAAGAGGAGCCGCTTGAAGAAGAAAAAGGAAAAGCGGTCTTCAACGTGACTCAACCCGGGCGGTCTATGCTTTCGTTCGACGATTTTCTTAAGGCTACGAACACAAAAGTCGCATCCGAAGAGGAGTGGCTGAAATCAATGGAAGTAGAACCACCGGTTCAAGCGATGGAAGGAGCTGGTGACGCTGAAAAGGTTTGTGCAGAGATGGAGACGGTTAGGGATGAATCGGTTGAAGAATCACCGATTCAGGCTATGGAAGAGGTTTTCGCTGAGAAGGAGGCGGTCGAGGTTGAACCGATTGAAGAACCACCGGTTCAAGCAATGGAAGAGGTTGTCGATGTGGACAAGGTTTGTGCTGAGGAAGAGGCGGTCGGGGTTCAACCGGTTGAAGAACCACCGGTTCAAGCGATTGTAGAGGTTGTCGATGTGGACAAGGTTTGTGCGAAGAAAGAAGCGGCTAGGGATGAAGTGAAGGTGGTGAACAAGGAGGCGGTTGAAGAGAAGATCCCGAACCTTGAGGATGGTGAGTTTCCTAAAGAACGTGGGTGGTCGTTGTTGGGAAGGAAGGTGGAGGTTGCGATTTCCACTGCCAAAGGAGTGAAGAGATTGGTGGACAATGAGATTATTCATTTCAATTTCCCTCTCCAATATTCCAATTACAAGTTTCAATGGATAGTTCGCATCTCAACTAAGCGTTCTGGAGAGGTACTACTATTACTTATTGCAATGTTTAGTTCTGTGGTTGAATTAACTTTTCAGGTTGGGAGGATGCCGATGGAATGGGCAAAAACTGTCATTCCACTCATGCAATCTGGAAAAATTAAGGTTCGAGGCCGATGCATTGCCACGCCATATAAACTGCAAATGATGCAAGAAATCATGTTGCTTGTGAGCTTTTACGTTCACTACTCTATATTCACGGATGTTGTTGATACATCTTGGAGGCTAGAGGCTAGTGGTAACATTAACTCTAGCGTTTATCCACTCCTTTCACTGTTTAATATGCTAGAAATCAAGCCATATCAGAAGGCTGACTTCACCCCGGAGGATATAGATTCTCGAAAGCGGTTGCTTAATCCAAATAAGCTTGATGCAGATGAAGCTGCAGCATTGCCTATGATCAAGCGAAAAAAGGGTGGTGAGCCGATTCCAGCACAAAATGATGATGAACAAGCTCTTTCAGAGTCTACTTTGAATAAACTTGTTGGAGCTGCAGAGATCTTTGACCTGGAGGAGAAGCAAGCACCGAGAACCTTGATGTGTACTCTAAAGCCTTATCAGAACCAAGCTCTCTATTGGATGTCAGAAATTGAGAAGGGAATTGATGTCGAATCTGCTGATAGAAACCTGCATCCTTTCTGGTCAGCCTACAATATATGCAATGAAAGGACAATTTATGTTAATGTATTTACTGGGGAGGGCACGGTTAAATTTCCAAAAGCAACACAGATGGCAAGAGGAGGGATTCTAGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTCTGATTCTAAGTAATCCAGGCAGAGAAAGGTCGGAAAACAACGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGGGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTGGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTTCATTATGGTGGGGGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGACGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATACAGAAGTGATGGGGTGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTGGTGCTAGATGAAGCTCATACTATAAAAGCCCATAAAAGCCAGGTTGCCCAGTCTGCATTTGCTTTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCACTTCAGAATTCATTGGAGGACTTATATAGCTTGTTATGTTTCCTGCGTGTTGAACCTTGGTGCAACTGGGAATGGTGGAGTAAGTTGGTTCAAAGGCCTTTTGATTATGGTGATCCAAGAGCTATAAAATTGGTTAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCCTGCCACCAACTGATATACAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGCGACTTCTATGATGCCCTCTTCGCTAGATCTAAAGTAAGTTATGCTGTAGCATCTGATCTTTAA 2511 0.4588 MAEHSVAEGGGTFRKVLSPSNNDNVVFVNGKPVLVAQPLTVVRALTSTGGARVLAAPLNPDEFDASKTPMIKVKEEPLEEEKGKAVFNVTQPGRSMLSFDDFLKATNTKVASEEEWLKSMEVEPPVQAMEGAGDAEKVCAEMETVRDESVEESPIQAMEEVFAEKEAVEVEPIEEPPVQAMEEVVDVDKVCAEEEAVGVQPVEEPPVQAIVEVVDVDKVCAKKEAARDEVKVVNKEAVEEKIPNLEDGEFPKERGWSLLGRKVEVAISTAKGVKRLVDNEIIHFNFPLQYSNYKFQWIVRISTKRSGEVLLLLIAMFSSVVELTFQVGRMPMEWAKTVIPLMQSGKIKVRGRCIATPYKLQMMQEIMLLVSFYVHYSIFTDVVDTSWRLEASGNINSSVYPLLSLFNMLEIKPYQKADFTPEDIDSRKRLLNPNKLDADEAAALPMIKRKKGGEPIPAQNDDEQALSESTLNKLVGAAEIFDLEEKQAPRTLMCTLKPYQNQALYWMSEIEKGIDVESADRNLHPFWSAYNICNERTIYVNVFTGEGTVKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRERSENNDWESIYDSIITNKGKHVNSSCKVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTNSAELISGYDVVLTTYGVLSAAYRSDGVNSIYHRVQWHRVVLDEAHTIKAHKSQVAQSAFALSSHCRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWEWWSKLVQRPFDYGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYDALFARSKVSYAVASDL. 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04498 836 Gene3D - 546 785 IPR038718 -
Seca7g04498 836 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 552 746 IPR014001 -
Seca7g04498 836 Pfam HIRAN domain 267 368 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca7g04498 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 784 IPR027417 -
Seca7g04498 836 FunFam DNA repair protein RAD5B 549 785 - -
Seca7g04498 836 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 293 829 - -
Seca7g04498 836 Pfam SNF2-related domain 499 824 IPR000330 GO:0005524|GO:0140658
Seca7g04498 836 SMART ultradead3 492 754 IPR014001 -
Seca7g04498 836 CDD DEXDc_SHPRH-like 496 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04498 Seca-Chr7 136081995 136086184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04498 197 830 RAD5 or RAD16-like Gene Family AT5G43530 57.656 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g04498 SNF2_N 1.4e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04498 K15505 - gmx:100806677 941.414