Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04491 ATGCAGTTTTTTTTTTCCCTTGTATTTGCAAGTGTGAGCACGGAAATTGACTTGCCGGGTGGTGCTGTTACCTGTCAAGAGAACACCAGGAAGAGGGGACGCACTGATTCATGCTGCAAGGCAGGGACAAAAGCTTGCCGTGAGAAGTTGCGGAGGGAGAAACTCAATGAAAGGTTTTGTGACTTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAGCTTAGAACTGAAGCTCAGGAACTCAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTTTGAAAGCAGATAAAGAAAAGATTGAGAGGCAGTTGAAAGCTATGCCCATTCCACCTGCAGGGTTTATGCCTCCCCCTGTAGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGCTCGAGATACATCCCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 585 0.4444 MQFFFSLVFASVSTEIDLPGGAVTCQENTRKRGRTDSCCKAGTKACREKLRREKLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLRTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIERQLKAMPIPPAGFMPPPVAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSHDHELRPPAA. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04491 194 SMART finulus 45 96 IPR011598 GO:0046983
Seca7g04491 194 Pfam Helix-loop-helix DNA-binding domain 43 90 IPR011598 GO:0046983
Seca7g04491 194 Coils Coil 80 135 - -
Seca7g04491 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 117 IPR036638 GO:0046983
Seca7g04491 194 FunFam Transcription factor bHLH104 42 123 - -
Seca7g04491 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 90 IPR011598 GO:0046983
Seca7g04491 194 CDD bHLH_AtILR3_like 44 119 - -
Seca7g04491 194 PANTHER BHLH TRANSCRIPTION FACTOR 24 194 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Seca7g04491 194 Gene3D - 35 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04491 Seca-Chr7 135943765 135947305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04491 20 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.330 4.07e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g04491 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04491 - - gmx:100787583 319.316