Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04490 ATGGATTTTCTAAGCAAAAGACACTTGCTCAATGTGTCACACACTTCATGTGAGTCACAACATGTTTTTTCCCCTACCACAACTAATCCTCCTTTGGTTGGGCATTATTCTGGTTCAAGTTTTCCCATCATAGCAACCATTGTAATAGGAATGTTTGCCACATCTTTCTTGCTCATGGGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGAACAGTGTTGATTTTGTAAGAATAAGGCGTTTTTCTCTATCTAGGCGATTTGAAGAGCCCTCTGCAGCACAATCATCACGTGCATCAGAGCCTAGAGGACTAGATGAAGCAGTGATACGGTTAATTCCAGTGATTCATTATAAGACAGAAGAAGAAGGAGACAGAGAGAGTGGTGAAAGAAGCTTTTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAACAAGATGAGAAGCTCAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGTGTAGATGTTTGGCTTCAGAACAATGCTAATTGTCCTCTTTGTAGAAGAAGCATTTCCTTGACAAGTGAAGTCCAAGTTGATCACCAGCTTCTCACTCCAAGGCCTTCCCCTCAGGATCAAAGACAAAATATTGAAGGTTGTGATGAAGATTTTGTTGTGATTGATTTAAATAATGAACATGATGGAGACCAACACTTGCAAGAAAGACAAGGCCAAAAATTGGAGTTACCAATATGTCCTATTGGTCCTTCATACTGGAAATTAGAGCAGAGAATTTTGCAGAAGAAAGCAATGAAGCTTCAAAAAGTGACCAGCATGGGGGATGAGTGTATTGGTAATAGAGACAAAGATGATGGGTTCTCAGTCCAAACCATTAGGAGGTCTTTCTCCATGGACTCATCAGAGCACAGAAAGTTCTATTTGACAGTTCAACTTCAACAGGCTTTACATCAACAAAATGGGCATGTCTATGAGGCCACTTCTATTGAAGTTTGTGGTGCTAGTAGTGATAGAGCCAAGATATCATGTTTTTCCTTTGGACATGGAAGTAGATCTAGAAGTGCTGTGTTACCTGTTTATTTGGACCCCTGA 1083 0.4026 MDFLSKRHLLNVSHTSCESQHVFSPTTTNPPLVGHYSGSSFPIIATIVIGMFATSFLLMGYYIFVIKCCLNWNSVDFVRIRRFSLSRRFEEPSAAQSSRASEPRGLDEAVIRLIPVIHYKTEEEGDRESGERSFCECAVCLNEFQQDEKLRVIPNCSHVFHIDCVDVWLQNNANCPLCRRSISLTSEVQVDHQLLTPRPSPQDQRQNIEGCDEDFVVIDLNNEHDGDQHLQERQGQKLELPICPIGPSYWKLEQRILQKKAMKLQKVTSMGDECIGNRDKDDGFSVQTIRRSFSMDSSEHRKFYLTVQLQQALHQQNGHVYEATSIEVCGASSDRAKISCFSFGHGSRSRSAVLPVYLDP. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04490 360 CDD RING-H2_EL5-like 136 179 - -
Seca7g04490 360 FunFam E3 ubiquitin-protein ligase ATL6 94 185 - -
Seca7g04490 360 SUPERFAMILY RING/U-box 136 185 - -
Seca7g04490 360 PANTHER RING-H2 FINGER PROTEIN ATL16 26 356 IPR044600 GO:0016567|GO:0016740
Seca7g04490 360 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Seca7g04490 360 SMART ring_2 137 178 IPR001841 -
Seca7g04490 360 Pfam Ring finger domain 136 179 IPR001841 -
Seca7g04490 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 184 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04490 Seca-Chr7 135686192 135687274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04490 37 360 C3H Transcription Factor Family AT1G04360 43.590 3.67e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04490 - - gmx:100794749 405.986