Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04488 ATGGAGGAGCACTACAAGGGAAAGCACCAGGACAAGTTGAAGGAGACAAGGGGAAGGAAAGAAGCTCGGTACCGTGGTGTCCGGCGGCGGCCGTGGGGTAAGTATGCGGCGGAGATCAGAGACCCTTCAAAGCAAAGGTCACGACTGTGGTTGGGGACATTTGATACAGCTCAAGAAGCCGCTAGAGCTTATGATCAAGCAGCCTTTAACTTGAGGGGTCATGTTGCAATTTTGAATTTTCCCAATGAGTACCATTCTCAAGTTAAGGACTATCCTCCAAATTTAGTATCATCCTCTTTCTCTTCAATTTCTCATCATGTCAGTGGCAGCAGCTCCTCTGGTGAACAAGGGAGACAAGTTTTTGAATTTGAGTATTTGGATGAGACGGTGTTGGAGGAGCTTCTTGAGTCACAAGAGGAGAAAAAGAGGAAGAAAGGTTAA 441 0.4671 MEEHYKGKHQDKLKETRGRKEARYRGVRRRPWGKYAAEIRDPSKQRSRLWLGTFDTAQEAARAYDQAAFNLRGHVAILNFPNEYHSQVKDYPPNLVSSSFSSISHHVSGSSSSGEQGRQVFEFEYLDETVLEELLESQEEKKRKKG. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04488 146 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Seca7g04488 146 ProSiteProfiles AP2/ERF domain profile. 23 81 IPR001471 GO:0003700|GO:0006355
Seca7g04488 146 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Seca7g04488 146 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca7g04488 146 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g04488 146 Pfam AP2 domain 23 74 IPR001471 GO:0003700|GO:0006355
Seca7g04488 146 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Seca7g04488 146 PANTHER DNA-BINDING DOMAIN 14 141 IPR044808 GO:0003700|GO:0009873
Seca7g04488 146 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Seca7g04488 146 SMART rav1_2 23 87 IPR001471 GO:0003700|GO:0006355
Seca7g04488 146 MobiDBLite consensus disorder prediction 1 25 - -
Seca7g04488 146 FunFam Ethylene-responsive transcription factor 2 22 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04488 Seca-Chr7 135666530 135666970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04488 20 142 AP2-EREBP Transcription Factor Family AT3G23230 65.079 4.47e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g04488 AP2 7.5e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04488 - - cave:132179741 170.244