Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04474 ATGGAGAACAACCAGCAACCGCAATCGGCGGCGTCCTATCCAACTCAACAACCACCACCGCCGGCGGCTGCTGCTGCTGCTCCATTCCACCACCTTTTGCAGCAGCAGCTGCAGATGTTCTGGACGTACCAGCGTCAGGAAATCGAGCACGTCAACGATTTCAAGAACCACCAGCTCCCCTTGGCTCGCATCAAGAAGATAATGAAAGCTGACGAAGACGTCCGCATGATCTCCGCTGAGGCCCCAATTCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTTGAACTCACTATCAGGTCATGGCTCCATGCCGAGGAGAACAAACGCCGAACCCTACAGAAGAACGATATCGCTGCTGCAATCACTCGCACCGACATTTTGTATCTGCAGATGAGATTCTAA 402 0.5373 MENNQQPQSAASYPTQQPPPPAAAAAAPFHHLLQQQLQMFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDILYLQMRF. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04474 133 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 23 126 - -
Seca7g04474 133 Gene3D Histone, subunit A 25 130 IPR009072 GO:0046982
Seca7g04474 133 FunFam Nuclear transcription factor Y subunit gamma 26 131 - -
Seca7g04474 133 MobiDBLite consensus disorder prediction 1 25 - -
Seca7g04474 133 Pfam Core histone H2A/H2B/H3/H4 45 121 IPR007125 GO:0003677
Seca7g04474 133 SUPERFAMILY Histone-fold 21 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04474 Seca-Chr7 135225714 135226115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04474 7 127 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.769 5.44e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca7g04474 Histone 6.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04474 - - pcin:129320575 187.193