Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04470 ATGGTTAGAGCTCCTTGCTGTGAAAAATTGGGACTCAAAAAGGGTCCTTGGACCCATGAGGAAGATGAAATCCTCATATCCTATATCCGAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAACAAGCTGTTTCTCTGTTCAATTTTTTAGGGCTATTAAGATGTGGAAAGAGCTGTAGACTACGCTGGATTAACTATTTAAGACCTGATATCAAGAGAGGAAATTTTACAAGTGAAGAAGAGGAAATTATTATTAAGATGCATGAGTTGCTTGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCTGGAAGAACTGACAATGAAATTAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTACTCAAAACCAATAATAACCAATCCAATTCAGATACCAAAAGAGTTTCCAAACCAAGAATCAAACGATCTGATTCCAATTCCAGCACATTAACTCAATCAGAACCTGCCAGTAGTCTTCATTTCCCTGAAATGGAGACTACATCAGCATGCACTTCTTCCAGTGATTTTTCATCAGTCATTAGTGAAGGACAAATTATGGATAACAGCATCAAGAGTGAAGACATAGAGTCTCTGGGGCCAATGCCTGAAATTGATGAAAGCTTTTGGTCAGACACAACTATGGATGATAAAAGCTCCACCATGCCATCAAATCCTTGGACAGTATCAAATGAATTACCACCTCAATACTCATCTAATTCAGTGGAAATGGAAACCTTTCAACAGAGTAATGGTTATAGTTCAAACTTTGATGATGGCATGGATTTCTGGTATGACTTGTTCATCAGAGCTGGAGAATCAATAGAACTGCCAGAGTTCTGA 849 0.3946 MVRAPCCEKLGLKKGPWTHEEDEILISYIRKHGHGNWRALPKQAVSLFNFLGLLRCGKSCRLRWINYLRPDIKRGNFTSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLKTNNNQSNSDTKRVSKPRIKRSDSNSSTLTQSEPASSLHFPEMETTSACTSSSDFSSVISEGQIMDNSIKSEDIESLGPMPEIDESFWSDTTMDDKSSTMPSNPWTVSNELPPQYSSNSVEMETFQQSNGYSSNFDDGMDFWYDLFIRAGESIELPEF. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04470 282 SMART sant 13 70 IPR001005 -
Seca7g04470 282 SMART sant 73 121 IPR001005 -
Seca7g04470 282 FunFam MYB-related transcription factor 13 73 - -
Seca7g04470 282 MobiDBLite consensus disorder prediction 145 178 - -
Seca7g04470 282 Gene3D - 11 74 - -
Seca7g04470 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
Seca7g04470 282 FunFam Transcription factor MYB15 75 150 - -
Seca7g04470 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca7g04470 282 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Seca7g04470 282 CDD SANT 76 119 IPR001005 -
Seca7g04470 282 ProSiteProfiles Myb-like domain profile. 9 68 IPR001005 -
Seca7g04470 282 MobiDBLite consensus disorder prediction 125 178 - -
Seca7g04470 282 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca7g04470 282 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 223 - -
Seca7g04470 282 Gene3D - 75 157 - -
Seca7g04470 282 CDD SANT 16 68 IPR001005 -
Seca7g04470 282 Pfam Myb-like DNA-binding domain 14 68 IPR001005 -
Seca7g04470 282 Pfam Myb-like DNA-binding domain 74 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04470 Seca-Chr7 135075630 135077490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04470 1 282 MYB Transcription Factor Family AT2G31180 49.123 3.20e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g04470 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04470 K09422 - gmx:100806975 397.127