Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04418 ATGCATGTGTTGACAGTGATGGGAAAGACAGGCAAATGGCTTAGGAACTTGCTGACAGGGAAGAAAGACAAAGAAAAAGAGAAGGAAAAATGTGTAACCAACCTGAGTTTGTCAAATGGCACAGAAAATCCAACTACTCCAATTTCTACAACTCCCAAGGAGAAAAGAAGATGGAGCTTCCGGAGATCATCAGCTTCCAAGGAATTGAATGTTGCAGAATCAAGTGTCACTGCTGTTTCAGTGACAGTGCAAACTGCCACAGATGCTGAGAAAGATCAGAGAAAGCATGACACTGCAACTGATGCTGTGATCTGCTTGAATTCTGATTCCAATGGAGGAGCTAGAAGAAGTATTGAAGAGGCTGCTGCCATTAAAATTCAATCTGTTTTTCGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGTTTAGTGAAGTTGCAAGCACTAGTAAGGGGTCACTTGGTAAGAAAACAGGCCACGGAGACACTAAGATGTATGCAAGCTTTGGTCATAGCACAAGCCAGAGCTTGTGCTCAGAGGGCTAGAATGGTGTCAGAAGGAAAGCCTAATCAAGAGCAATCAACCTACAGAAAAACCACAAAGGACAATTTATTCATGCATATGTATAATGAAATGGACAGAGGCTTGGAAGAGAATGTCAAGATTGTGGAGATGGATGTTTGTGAATCCAAAGGCAACTCAAGAGGCAGAAACAGCACTGCAAATCATGGACATCAGGAATTTTCTGAGCATAGATTTTCTGCATATTATTCACCAAATGGATCATACTCAAAGAAAGAAAACTTCAAGGCATCACCTGCACCATCAGCATTGACAGAGTTGAGTCCAAGAGCATGCAGTGGACATTTTGAGGACTGTACCTTCAATACAGCACAGAGCAGTCCCCATTGCTACTCTGCTATGTCAAGAATAGAGGATTCAAAGCTTCCTTTTGCTTTTCCTAAACCAGCCTATGCAGAATCCATGTCCTATGACTACCCTTTATTCCCAAATTACATGGCTAACACAGAATCATCAAGGGCCAAAGTCAGATCACAGAGTGCTCCAAAGCAAAGGCCAGATTCATTTGAAAGGCAACCAAGCCGGCGAAGAGCTTCAGTTGAAGGAAGAAATGTACCAAAGCCAGTGAGGATGCAGAGGTCATCTTCACATGTGGGTGCCACTGCCCAAAACTACCAATATCCATGGTCAATAAAGCTTGACAGGTCCTCAGTTTCACTCAAAGACAGTGAGTGTGGCTCTACAAGTACAGTGCTCACAAACACTAACTACTGCAGATCTCTTGTTTCATATGATGTGAGTTCTTACTTCTTACCATTCTCATATAACATGTTTTCACCATCCAGTTGA 1377 0.427 MHVLTVMGKTGKWLRNLLTGKKDKEKEKEKCVTNLSLSNGTENPTTPISTTPKEKRRWSFRRSSASKELNVAESSVTAVSVTVQTATDAEKDQRKHDTATDAVICLNSDSNGGARRSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQATETLRCMQALVIAQARACAQRARMVSEGKPNQEQSTYRKTTKDNLFMHMYNEMDRGLEENVKIVEMDVCESKGNSRGRNSTANHGHQEFSEHRFSAYYSPNGSYSKKENFKASPAPSALTELSPRACSGHFEDCTFNTAQSSPHCYSAMSRIEDSKLPFAFPKPAYAESMSYDYPLFPNYMANTESSRAKVRSQSAPKQRPDSFERQPSRRRASVEGRNVPKPVRMQRSSSHVGATAQNYQYPWSIKLDRSSVSLKDSECGSTSTVLTNTNYCRSLVSYDVSSYFLPFSYNMFSPSS. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04418 458 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Seca7g04418 458 Pfam IQ calmodulin-binding motif 146 160 IPR000048 GO:0005515
Seca7g04418 458 MobiDBLite consensus disorder prediction 35 54 - -
Seca7g04418 458 MobiDBLite consensus disorder prediction 35 53 - -
Seca7g04418 458 MobiDBLite consensus disorder prediction 348 394 - -
Seca7g04418 458 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Seca7g04418 458 Gene3D - 118 186 - -
Seca7g04418 458 PANTHER IQ-DOMAIN 5-RELATED 7 377 - -
Seca7g04418 458 SMART iq_5 141 162 IPR000048 GO:0005515
Seca7g04418 458 SMART iq_5 118 140 IPR000048 GO:0005515
Seca7g04418 458 MobiDBLite consensus disorder prediction 348 363 - -
Seca7g04418 458 MobiDBLite consensus disorder prediction 364 379 - -
Seca7g04418 458 Pfam Protein of unknown function (DUF4005) 323 380 IPR025064 -
Seca7g04418 458 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04418 Seca-Chr7 133238035 133240283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04418 6 443 IQD Protein Family AT4G14750 47.702 2.14e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04418 - - gmx:100817667 615.92