Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04302 ATGGAAACACCAAAGATTTTCCAGAGCAGCTTTTCCCCCTCCGACAACAACAAGAGCAATAACGCTAATTCCGACCACTTTATCGTCGAGGATCTCTTCGACTTCTCCAACGACGCTATCATCACCGACTCCACCTTTGACTCTGTCCCTTCCACCGACTCCTCCACCGTAACCGCTGTCGATAGCTGCAACTCCTCGTCTTTCTCTGTCTCTGACCCCAATTTTGTCGCGGATATTGGTTGCCGGAATCTCTCTGACAGCCATTTCTCTGGTGACCTCTGCGTTCCGCAGTATGATGATCTAGCGGAGCTGGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAAAAGCTGCAGCTGATATCAGGGGTGAAAGCCCGAAAGTACGATGAAGCAGCATCAGCAGAGGCCCGCGAGTTCCAGTCCGAGCCCAACCGAAACAGCCCCATATTCAACACGGAGGTGTCGGTTCCAGCGAAGGCCCGCAGCAAGAGGACCCGTGGGCCGCCATGCAACTGGACCTCACGTCTCCTCGTCCTGTCACCAACGCCAACGACGTCGTCTTCCGACCCTGAAGTCGTCATTCCCACTCCTACCCTGCCCTCCGTTACTGTTCCCATCACTACAAAGAAACCAGCTAAGGCAGCTCCGAGGAAGAAGGACGGCGGTGACAGCAGTGGCTCAGGGTCCGGCGACGGCCGCAAGTGCCTGCATTGCGCTACGGACAAGACGCCACAGTGGCGAACCGGGCCCATGGGTCCAAAGACTCTGTGCAACGCTTGCGGCGTGAGGTATAAGTCGGGCCGGTTGGTGCCGGAATACAGGCCCGCGGCGAGCCCAACGTTCGTGCTGACGAAGCACTCCAACTCGCACCGTAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATGGTGCGGTCCCAGCAGCACCAACAGCAGCCGTTCCTACACCATCATCACCATCAGAATATGGTGTTCGATATATCCAACGGTGATGATTACTTGATCCACCAACATGTTGGACCCGATTTTAGGCAGCTGATCTAG 1059 0.5581 METPKIFQSSFSPSDNNKSNNANSDHFIVEDLFDFSNDAIITDSTFDSVPSTDSSTVTAVDSCNSSSFSVSDPNFVADIGCRNLSDSHFSGDLCVPQYDDLAELEWLSNFVEESFSSEDLQKLQLISGVKARKYDEAASAEAREFQSEPNRNSPIFNTEVSVPAKARSKRTRGPPCNWTSRLLVLSPTPTTSSSDPEVVIPTPTLPSVTVPITTKKPAKAAPRKKDGGDSSGSGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQQHQQQPFLHHHHHQNMVFDISNGDDYLIHQHVGPDFRQLI. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04302 352 Gene3D - 234 285 IPR013088 GO:0006355|GO:0008270
Seca7g04302 352 MobiDBLite consensus disorder prediction 187 211 - -
Seca7g04302 352 PANTHER GATA TRANSCRIPTION FACTOR 16 315 - -
Seca7g04302 352 FunFam GATA transcription factor 232 317 - -
Seca7g04302 352 PIRSF Txn_fac_GATA_plant 7 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca7g04302 352 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Seca7g04302 352 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Seca7g04302 352 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g04302 352 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Seca7g04302 352 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Seca7g04302 352 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Seca7g04302 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Seca7g04302 352 MobiDBLite consensus disorder prediction 163 182 - -
Seca7g04302 352 MobiDBLite consensus disorder prediction 187 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04302 Seca-Chr7 126965979 126967867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04302 27 352 C2C2-Gata Transcription Factor Family AT5G25830 54.167 8.58e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca7g04302 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04302 - - zju:107420464 454.521