Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04292 ATGAATCCTGTGAAGGAGGAGTTTCCTGAAGAAAATTGTTCCCACTCTGCTCCACAACCATTGGAGGGGCTTCATGAGAGTGGTCCTCCACCATTCCTCACAAAAACATATGACATGGTTGATGATGCTTCTACTAATCATGTAATTTCCTGGAGCAGAGGAAACAATAGTTTCATTGTGTGGGATCCTCAGGCATTTTCCATCAGTCTTCTCCCCAGATACTTCAAGCACAATAACTTTTCTAGCTTTGTCAGGCAACTTAACACCTATGGGTTTAGAAAGGTAGATCCAGATAGGTGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAAAGGCATCTCTTGAAGAATATTAGGAGAAAGAAGACAACTCAGCCTCAGCCACCACAGCAAGTTCTGGACCCTTGTGTTGAACTGGGGCGGTTTGGATTAGATGGAGAAGTTGATAGGTTTGGATTAGATGGAGAAGTTGATAGGTTGAGGCGTGACAAACAAGTTCTCATGGTGGAGCTGGTGAAACTTAGACAACAACAGCAGAACACCAGAAACTACCTTCAATCAATGGAAGGTAGGCTAAAAAAAACTGAACAGAAACAACAACAGATGATGAATTTCTTGGCAAGGGCAATGCAGAATCCTAACTTCTTGCAACAATTAGTTCAAAAAAAAGAATTGAGAAAGGAGATGGAGGAAGCATTTTCCAAGAAAAGAAGAAGGCCTATTGATCAAGGTCCTAGTAATGTTGAGGTAGCTGAATCAGGTTATGCTGAAGAGTGTTCTGGCATGGTTAAACTTGAACAGGAGGAATACAGTGACATGTCAGAGCTTGAGGTTTCAGACCTGGAACTTGCTATGAATATGGGGGAACAAAGTGGAAGCCAAAAGAACCTTGAGGAGAAAGGAGTTGAAATTGAAAGTAGAAATAAAGACATTGATGAAATGTTTTGGGAAGATTTTTTGAATGAGGGTGATGAAGAAGATCTACTAGGATTTAAAGAAGATGGTAAAAATATCGACAATGTATTGGCTGAGGAACTTTGTTATTTAGCCTCAAGTAGTCCTAAATGA 1068 0.4054 MNPVKEEFPEENCSHSAPQPLEGLHESGPPPFLTKTYDMVDDASTNHVISWSRGNNSFIVWDPQAFSISLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRKKTTQPQPPQQVLDPCVELGRFGLDGEVDRFGLDGEVDRLRRDKQVLMVELVKLRQQQQNTRNYLQSMEGRLKKTEQKQQQMMNFLARAMQNPNFLQQLVQKKELRKEMEEAFSKKRRRPIDQGPSNVEVAESGYAEECSGMVKLEQEEYSDMSELEVSDLELAMNMGEQSGSQKNLEEKGVEIESRNKDIDEMFWEDFLNEGDEEDLLGFKEDGKNIDNVLAEELCYLASSSPK. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04292 355 FunFam Heat shock transcription factor 1 25 122 - -
Seca7g04292 355 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g04292 355 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g04292 355 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g04292 355 Gene3D - 24 122 IPR036388 -
Seca7g04292 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 269 IPR027725 -
Seca7g04292 355 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g04292 355 SUPERFAMILY "Winged helix" DNA-binding domain 27 121 IPR036390 -
Seca7g04292 355 MobiDBLite consensus disorder prediction 1 28 - -
Seca7g04292 355 Coils Coil 157 177 - -
Seca7g04292 355 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g04292 355 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04292 Seca-Chr7 126640074 126642535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04292 13 353 HSF AT3G22830 60.000 1.28e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca7g04292 HSF_DNA-bind 1.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04292 K09419 - qsu:112016413 456.832