Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04287 ATGATGGAAGACACGGGTAATAGGGTTAATGAGGGTGAAGCTGAAGATGCAAATAATTTGAAGTCCCCTGATGAAGAAAATGCTTGTTCTGTTGAGGATGTTACTGATGTATACAAAAGGATTTCTGAGTTAACTGATGATGACATTAGAATCCTTGAGTTCGATTCTGAACTGGATGGGTATAATTTTTATTCTGAGTATGCTAAATTCAAAGGTTTTGCGGTTAGGAAAGATGATGTTTATCGTGATCGTAATAGGTTAATTACCATGAGGCAATTAGTTTGTAACAGACAGGGGGAAAGGAGTGAGAAGCATTTAAATAGGGCTGACAGAATTAGGAAAGCTAAGGCAATTACTCGTACCAATTGTCTTGCAAGGCTTCGACTGTATTTTGATAAAAACAGTGGGAAGTGGAAGGTTGGAATTTTTGAGCCTGAACACAATCATGAGCTTACTCCTTCAAATATGGTTCATTTGGTGTATGACCTCAAGAGAATGTGGGCTACCGCTTTTTTCAGAGATAACTTTTTTGCTGGTGTCCGGACTACCTCCATTTGTGAAGGTATTAATTCTTTTACCAAGAGATATGTACAGAGTAAAAACAGTCTCGTTGATTTTCTACACAATTTTGAAAGAGCTTTGAATGAATATAGGCACAATGAATTAGCTTCTGATTTTAAATCCTCATACACCCAGCCAGTTCTGACAACTGCTTTGGAAAAGTATGAAGTTAATGCGTGTAATTTTTACACCAGGAATAAGTTTTTTGAAATTAGAAAGCAAATTGAGAAAGTTGCTGCTTTGAATATGATTGAAAGGACTGAGGTAGGTAATGTTGTCACATTGAAGATGAATAAATTTGGAAGTCCTGATTCTGTATACCTTGTTTTGTTTGATAAGTCTGTTGGTAAGTTTGTATGTGATTGTCAGTTGTTTGAGTCATGTGGTTTACCATGTTCACATATCTTTTGTGCTATGAAGCATGAGCAAATAGAGTCAATTCCTCCTTCACTCATCTGCAAAAGGTGGACTAAGTTTGCTAAGGTTGATTATATTTCTGCAATTTATGTTGATGAGGGTGATACTACAAAGAAGGAAGTGTTGAGGTCCGGTGTTGTGGGTGCTGCTTGTAATAGGCTTAACAAGGCTGCACATAAAGATCCTCATAATTTTGTGAAAAACATTGAGGCCATTCATCAATTAGCAGACCAGATGGAAAGGCAAGATGGGGTTGATGTCAACATTGCTGACATATCAAGGGTTGTCCGTGATCCAACTATTGTTAAAACCAAAGGTGCACCCTGTAAGAGTAAGAAAATCACGAAAAGAAGAAAATGCTCTTATTGTAAGCGTGTTGGGCATACAATCAGGACTTGTTCCAAGTTCTCAACGCGAGATCAGCTGCATACTGTAGAAGAAGAGGAGTCTTCAGTTGAGAGTGATGGAGAATCAAGAGATTTAACGGTAATGCCTTGTGATATTGAATGTTGTATGAGATTTAGATTTATTGTCATAAACTAA 1521 0.3728 MMEDTGNRVNEGEAEDANNLKSPDEENACSVEDVTDVYKRISELTDDDIRILEFDSELDGYNFYSEYAKFKGFAVRKDDVYRDRNRLITMRQLVCNRQGERSEKHLNRADRIRKAKAITRTNCLARLRLYFDKNSGKWKVGIFEPEHNHELTPSNMVHLVYDLKRMWATAFFRDNFFAGVRTTSICEGINSFTKRYVQSKNSLVDFLHNFERALNEYRHNELASDFKSSYTQPVLTTALEKYEVNACNFYTRNKFFEIRKQIEKVAALNMIERTEVGNVVTLKMNKFGSPDSVYLVLFDKSVGKFVCDCQLFESCGLPCSHIFCAMKHEQIESIPPSLICKRWTKFAKVDYISAIYVDEGDTTKKEVLRSGVVGAACNRLNKAAHKDPHNFVKNIEAIHQLADQMERQDGVDVNIADISRVVRDPTIVKTKGAPCKSKKITKRRKCSYCKRVGHTIRTCSKFSTRDQLHTVEEEESSVESDGESRDLTVMPCDIECCMRFRFIVIN. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04287 506 Pfam FAR1 DNA-binding domain 62 152 IPR004330 -
Seca7g04287 506 SMART 26again6 305 332 IPR006564 GO:0008270
Seca7g04287 506 MobiDBLite consensus disorder prediction 1 26 - -
Seca7g04287 506 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 155 IPR031052 GO:0006355
Seca7g04287 506 ProSiteProfiles Zinc finger SWIM-type profile. 294 330 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04287 Seca-Chr7 126572082 126574364 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g04287 FAR1 8.3e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04287 - - ccaj:109806300 331.257