Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04273 ATGCCAGTGAGGCAGATGAAGGAGAGCTCAGAGCAACACCTTGTCATCAAAACCCATCTGCAGAACCCCATGAATCCAGCTAAGAAGGTTACTAGGGCTGTCCAGAATGGTAAAGGTCCACCACCACTGCCACAAGAACCCCATAACCAAACTTCACCTCATGCAAGGACCAGGGGAAGAAGAAGGAGCAAAGTTGGCAGAAAATATGATCAAGGAGATGTTTTGATGACACCCAGTTGCCGACCCTGCACTGTTGTGACAAATTCTGCAAATGGGTCTGTTGAAAATGGCAGCATCTCTGGTGACATAGAAATGGGTTATCCTACTTCAAGCAAGTCTTTGAGCCTTGCTCTTAGGCCAGGATATGGACAAGTTGGAACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAATCATTATGATGTCACTATTACACCTGAAGTGTCTTCCAAAGCAGTAAACAGATCCATCATAGCAGAACTTGTGAGGCTCTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAGAAATCTGTACACAGCAGGGGCACTTCCCTTTTCATGGAGAGAGTTTAAGATTAAGCTTATAGAGGAAGAGGATGGAGTTAATGGCCCCAAGGAAAGAGAATACAGAGTGGTGATCAAGTTTCTTTCACGGGCTAACTTGCATCACTTGGGGCAGTTTCTAGCTGGTAAGCGTGCTGATGCTCCACAGGAGACACTCCAAATTCTTGACACCGTACTGAGAGAGCTATCATTATCATGGTTTTGCCCCATTGGGAGATCCTTCTTTTCACCTGACATTAAAACACCACAAAGGCTTGGAGAGGGATTGGAGTCTTGGCGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCTCTTAATATTGATATGGCCTCTGCTACATTCATTGAACCTCTTCCAGTAGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTGCTGTCAAGGCAATTGTCCGATGCTGATCGTATTAAGATTAAGAAAGCCCTTAGAGGAATTAAAGTTGAAGTAACACACAGAGGAAGTGTTAGAAGAAAATATCGTGTTTCAGGTTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCAGTGGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTAAATATACCCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGTTATACTAAAAGGTTGAATGAGAAGCAAATTACCGCGCTCCTGAAAGTTACTTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGCGGACCATTCAGCATAATGCTTTTGATCAAGATCCATATGCAAAGGAATTTGGGATTAAAGTCAGTGAAAAGCTAGCTTCTGTGGAAGCTCGAATTCTTCCTGCCCCTTGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGATGGGCATGCATAAATTTTTCACGAAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCAGGTAGAGAAAGCTTTGAAGCACGTTTACCATGTGTCAACAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGTTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACGGAACTTGGTCTAATTTCTCAATGTTGCCTGACAAAGCATGTCTTTAAGATCACTAAGCAGTATTTGGCTAATGTGTCTCTGAAGATCAATGTCAAGATGGGAGGTAGAAATACTGTTCTTGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAATGGAGAAGAATCTAGCCCCTCAATAGCAGCTGTAGTAGCATCCCAAGATTGGCCTGAAGTAACGAAATATGCAGGATTAGTTTGTGCTCAAGCTCATAGACAGGAACTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTCCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCCTTTAGAAAAGCAACAGGACAGAAGCCACTAAGGATTATATTTTACAGGGATGGTATAAGTGAAGGGCAGTTTTACCAAGTTCTACTATATGAGTTGGATGCAATTCGAAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTTATAGTTGTACAAAAAAGACATCATACTCGGTTATTCGCAAACAACCACAGGGACAGGAACACTACAGATAAGAGTGGAAATATATTGCCGGGGACTGTTGTTGATTCCAAAATCTGTCACCCAACAGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACAAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAATTTCACAGCAGATGGGATTCAATCTCTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCTGTATCTGTTGTTCCTCCAGCATATTATGCACACTTAGCAGCTTTTCGAGCTCGATTCTATATGGAACCAGACCTGCAGGAGAATGACTCCACTGGGGGTGGTAGTGCTCATCATGCTGGAGACTGTGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTCTATTGTTAA 2916 0.4201 MPVRQMKESSEQHLVIKTHLQNPMNPAKKVTRAVQNGKGPPPLPQEPHNQTSPHARTRGRRRSKVGRKYDQGDVLMTPSCRPCTVVTNSANGSVENGSISGDIEMGYPTSSKSLSLALRPGYGQVGTKCIVKANHFFAELPDKDLNHYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRRNLYTAGALPFSWREFKIKLIEEEDGVNGPKEREYRVVIKFLSRANLHHLGQFLAGKRADAPQETLQILDTVLRELSLSWFCPIGRSFFSPDIKTPQRLGEGLESWRGFYQSIRPTQMGLSLNIDMASATFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKALRGIKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAFDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGLVSGGMIRDLLVSFRKATGQKPLRIIFYRDGISEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNTTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENDSTGGGSAHHAGDCGVKPLPALKENVKRVMFYC. 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04273 971 Gene3D paz domain 317 441 - -
Seca7g04273 971 Gene3D - 680 971 IPR036397 GO:0003676
Seca7g04273 971 CDD PAZ_argonaute_like 322 436 - -
Seca7g04273 971 Gene3D - 501 674 - -
Seca7g04273 971 Pfam Mid domain of argonaute 520 597 IPR032473 -
Seca7g04273 971 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 106 933 - -
Seca7g04273 971 SUPERFAMILY Ribonuclease H-like 603 933 IPR012337 -
Seca7g04273 971 ProSiteProfiles PAZ domain profile. 323 437 IPR003100 GO:0005515
Seca7g04273 971 SUPERFAMILY PAZ domain 317 476 IPR036085 GO:0005515
Seca7g04273 971 Pfam PAZ domain 346 453 IPR003100 GO:0005515
Seca7g04273 971 SMART Piwi_a_2 611 932 IPR003165 GO:0003676
Seca7g04273 971 Pfam Argonaute linker 2 domain 463 509 IPR032472 -
Seca7g04273 971 ProSiteProfiles Piwi domain profile. 611 932 IPR003165 GO:0003676
Seca7g04273 971 MobiDBLite consensus disorder prediction 18 68 - -
Seca7g04273 971 SMART PAZ_2_a_3 327 459 IPR003100 GO:0005515
Seca7g04273 971 SMART DUF1785_2 270 322 IPR014811 -
Seca7g04273 971 Pfam N-terminal domain of argonaute 128 261 IPR032474 -
Seca7g04273 971 CDD Piwi_ago-like 481 931 IPR045246 -
Seca7g04273 971 FunFam Argonaute 10 501 674 - -
Seca7g04273 971 FunFam Protein argonaute-2 316 442 - -
Seca7g04273 971 FunFam protein argonaute 10-like 680 971 - -
Seca7g04273 971 Pfam Argonaute linker 1 domain 271 320 IPR014811 -
Seca7g04273 971 Pfam Piwi domain 612 931 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04273 Seca-Chr7 126299050 126309602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04273 1 971 Eukaryotic Initiation Factors Gene Family AT5G43810 80.723 0.0 1635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04273 K11593 - gmx:100816999 1785.39