Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04270 ATGGTTGTAAAGCCTGGTCCTGTGCTGGACTACCTTCTCCAGAATCAGAATGTTCAACAACCAAACTTAATTGATTGGGCCAAGGCAGAAAGAGTGCTGAAAAGCCTCAGAATTAAGGCTAATAATATTGAGTACAAAATCACTGGACTGAGTGAGAAGCGCTGCAGGACACAGACGTTTTTATTAGAACACGGAAAGGATGCCAATGGTGAAGTGCAGTCAAGTGAGATCACGGTTTATGACTACTTCAAACTCCATGAAAAGATTGAACTACACTGTTCTGCTGATTTGCCATGCATCAATGTTGGCAAACCAAAGAGCCCGACTTATTTTCCTGTAGAGCTATGCACATTGGTCTCATTGCAAAGGTATACCAAGGCACTCACAAATTTGAAAAGGGCTCAGTTTGTGGAGAAATCAAGGCAAAAACCCCTTGAAAGGAAAAAAGCCTTGCAATTTCAATTCAATTCCTTAAGAAGCAGCATATATAATTATCCTATGCTTCAGTCTTCTGGGATTAACATTGAACCAGGGTTAACTATAGTTGATGGACGTAGTCTGGAAGATCCATGGCTTGTAGTTGGACAGGGAGAGGAAATTTATCCATACTTTGGTAGGCCCTGGAATTTCAACAATAAGAAACTAATTGAACCTGTGAAGATTGAGCACTGGGCCATTGTAAACTTCTCAGCTTGGTGTGATACAAGAAATCTATGCAACACTCTTGAGCATTGTGCTGAAATGATAGGGACGCACTTAAATCCTCCAATCCAAATAATTGAAGAGGATAGTCGCTTCAGGCATGATCCAGCACATGTCAGGGTTGACAAAATGTATGAAATTTTAAAGGCCAAGATGCCTAAGAACCCTCCGATTCAGCTTCTATTGTGTATTCTTCCAGAGAGAAAGAATTCTGCTATTTATGGGCCTTGGAAAAGGAGAAATCTGGTTGATGAAGGAGTTGCAACACAATGTATTGCACCAACAAAAATTAATGATCGGTATATTACTAATGTTCTTTTGAAAATTAATGCAAAGGTATTTATGACATTAAAACTTGGTGGCATGAATTTCTCTCTGGGTTACATACCTCAAGTTTCTAAGGAACCTACCTGGATTCTTGGCATGGCTGTTTCACATGGATCTCCTGGTAGATCAGATGTACCACATCTATTGCTGCGGTTGTGA 1188 0.4015 MVVKPGPVLDYLLQNQNVQQPNLIDWAKAERVLKSLRIKANNIEYKITGLSEKRCRTQTFLLEHGKDANGEVQSSEITVYDYFKLHEKIELHCSADLPCINVGKPKSPTYFPVELCTLVSLQRYTKALTNLKRAQFVEKSRQKPLERKKALQFQFNSLRSSIYNYPMLQSSGINIEPGLTIVDGRSLEDPWLVVGQGEEIYPYFGRPWNFNNKKLIEPVKIEHWAIVNFSAWCDTRNLCNTLEHCAEMIGTHLNPPIQIIEEDSRFRHDPAHVRVDKMYEILKAKMPKNPPIQLLLCILPERKNSAIYGPWKRRNLVDEGVATQCIAPTKINDRYITNVLLKINAKVFMTLKLGGMNFSLGYIPQVSKEPTWILGMAVSHGSPGRSDVPHLLLRL. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04270 395 Pfam PAZ domain 9 135 IPR003100 GO:0005515
Seca7g04270 395 Gene3D paz domain 1 124 - -
Seca7g04270 395 SUPERFAMILY Ribonuclease H-like 182 384 IPR012337 -
Seca7g04270 395 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 386 - -
Seca7g04270 395 Gene3D - 187 361 - -
Seca7g04270 395 CDD PAZ_argonaute_like 5 119 - -
Seca7g04270 395 ProSiteProfiles PAZ domain profile. 45 120 IPR003100 GO:0005515
Seca7g04270 395 SUPERFAMILY PAZ domain 2 152 IPR036085 GO:0005515
Seca7g04270 395 ProSiteProfiles Piwi domain profile. 294 395 IPR003165 GO:0003676
Seca7g04270 395 Pfam Piwi domain 295 389 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04270 Seca-Chr7 126126933 126129262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04270 3 391 Eukaryotic Initiation Factors Gene Family AT1G48410 28.199 1.29e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04270 K11593 - pop:7486850 463.381