Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04245 ATGGAAACAGCGGCCACTTGCTTCTTCTGCGGTAGAATCCCTGCAAAAGGGAAATTGGGTGTTGCAAGTGAGCTTTTTTTCCGTAGTAATGCCTCTTTTGTGCCCTTTTCTTCATTTGGATCATTCTGTCTATTAACACGTAACAATAATGTCAATACTATGTCCATGCCCATGTGCTCTGTGTCCTCTTCAATTGGAACCCATCGCCTCATTCGAAACGCCACTAATAGCAGTGAAATTAAGCTTCCCAGTTATACCAAAAGAAGAAGGAGAAGAAGAAGTCGGTTTAATGAAACTGGGTCTTCTTCTTCTTCTCCTCAGCTACCCAGTGAGAACAACGTGGGTGGTGGTAGTGATATAGGTATTAATCAGAATGGAGACCCAGTTGGACGGAAAGAGCTTGGAAAGAGTGTGGTGAGATGGATTCGTGATAGCATGAGAGCTATGGCTTCTGATTTTGCTTCAGCAGAGTTACAAGGAGAGTTGGAGTTCTCAGAGCTGAGGCAGCGCATGGGACCTGGTCTCACTTTTGTTATCCAGGCTCAGCCATATCTGAACGCTGTTCCTATGCCTCTTGGCCTTGAAGTTATCTGCTTGAAGACCTGCACCCACTATCCCACTCTGTTTGATCACTTTCAGAGGGAGCTACGTGATGTTCTCCAAGACCTGCAGGGTAAATCCTTGGTTCAGGATTGGCGTGATACTCAGTCCTGGAAACTGCTTAAGGAGCTCGCCAATTCAGCTCAGCATAGGGCAGTTGCGAGAAAGATAACCCAGCCCAAGACTGTCCAGGGCGTTTTAGGAATGGACATAGAAAAGGTCAAAGCAATACAGCAAAGGATAGATGAATTCACCAACAGCATGTCAGAACTTCTCCGTATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAAATGATACTTCTGATTCATTAAAACCGATCGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATCTGTAATTTAAATGCCATCAGTACTTCTACAGGATTGGGGGGAATGCATTTGGTGATATTTAAGGTTGAAGGGAACCACCGGTTGCCACCTACTACTCTTTCTCCTGGAGACATGGTTTGTGTGAGAACCTGTGACAGTAGGGGTGCAGTTACAACTTCTTGCATGCAAGGATTTGTGAACAATCTTGGGGATGATGGCTATAGTATTACTGTTGCTTTAGAGTCACGTCATGGTGATTCTACATTCTCTAAACTATTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCAGATACGCTCACATATGAGCGTAACTGTGAAGCACTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACCCTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAAAAGAATGATTTGGCTGACTGGACAGAAGAAAAACTGAATGGAAAGTTAGGAGGTGAAACCTTTGATAATTCTCAGCAGAGAGCAATTGCACTGGGTTTGAATAAGAAGAGGCCTGTGTTGGTTATCCAAGGGCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAAATTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGATTAAACATTGTACGGGTGGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCCTTGGGAGAAATTGTAAATACAAAGCTTGCTGGTTATCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGGAAAGATCTAAGACATTGTTTAAGGGATGATTCATTAGCTGCAGGCATACGCCAACTTCTGAAACAGCTGAGCAGGTCGCTGAAGAAAAAGGAAAAGCAGACTATAAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACTGGAGCAGCTGATCCTTTGATTCGAAGGCTAGGTACTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTACAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGGTGGTCTAGGAATATCTCTGCTGGAGAGAGCTTCAACTTTGCATGAAGGGATCCTTACTACCACATTAACAACACAATACCGTATGAACAATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTACGGGGGATTGTTGAAGTCCTCTGAGACTGTCTTTTCTCATCTTCTTGTAGACACTCCTTTTGTTAAGGTAATATGCCCGTAA 2382 0.437 METAATCFFCGRIPAKGKLGVASELFFRSNASFVPFSSFGSFCLLTRNNNVNTMSMPMCSVSSSIGTHRLIRNATNSSEIKLPSYTKRRRRRRSRFNETGSSSSSPQLPSENNVGGGSDIGINQNGDPVGRKELGKSVVRWIRDSMRAMASDFASAELQGELEFSELRQRMGPGLTFVIQAQPYLNAVPMPLGLEVICLKTCTHYPTLFDHFQRELRDVLQDLQGKSLVQDWRDTQSWKLLKELANSAQHRAVARKITQPKTVQGVLGMDIEKVKAIQQRIDEFTNSMSELLRIERDAELEFTQEELDAVPKPNDTSDSLKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVIFKVEGNHRLPPTTLSPGDMVCVRTCDSRGAVTTSCMQGFVNNLGDDGYSITVALESRHGDSTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNDLADWTEEKLNGKLGGETFDNSQQRAIALGLNKKRPVLVIQGPPGTGKTGLLKQIIACAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLGEIVNTKLAGYREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLSRSLKKKEKQTINEVLSSAQVVLATNTGAADPLIRRLGTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERASTLHEGILTTTLTTQYRMNNAIASWASKEMYGGLLKSSETVFSHLLVDTPFVKVICP. 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04245 793 Gene3D - 289 736 IPR027417 -
Seca7g04245 793 Pfam AAA domain 504 720 IPR041677 GO:0004386
Seca7g04245 793 CDD DEXXQc_SMUBP2 504 753 - -
Seca7g04245 793 MobiDBLite consensus disorder prediction 98 120 - -
Seca7g04245 793 Coils Coil 629 649 - -
Seca7g04245 793 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 156 787 - -
Seca7g04245 793 MobiDBLite consensus disorder prediction 81 131 - -
Seca7g04245 793 Pfam AAA domain 730 781 IPR041679 -
Seca7g04245 793 SMART ultradead3 500 791 IPR014001 -
Seca7g04245 793 Coils Coil 605 625 - -
Seca7g04245 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 789 IPR027417 -
Seca7g04245 793 FunFam DNA-binding protein SMUBP-2 isoform X2 307 438 - -
Seca7g04245 793 SMART AAA_5 519 734 IPR003593 GO:0016887
Seca7g04245 793 Gene3D - 307 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04245 Seca-Chr7 125682041 125688295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04245 490 693 Core DNA Replication Machinery Family AT1G08840 25.728 1.31e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04245 - - aip:107625008 1209.51