Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04243 ATGGAACGACGGCAACCGTCGCCGTCGCCGCCGCCATCCCCACCGTCGCGCACCATCCTTGGGAAGTACCAACTAACACGGTTCCTAGGGCGCGGGAACTTCGCGAAGGTGTACCAGGCAGTGTCCCTGACGGACGGCACCACGGTGGCCGTGAAAATGATCGACAAGTCCAAAACAGTGGACGCTGCGATGGAGCCGCGAATCGTGCGAGAAATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCAAAATCCATGAGGTAATGGCCACCAAGACCAAGATCTACCTCATCGTCGACTACGCCGGCGGCGGCGAGCTCTTCTCCAAGATCTTCCGCCGAGGCCGTCTGCCGGAAAACGTCGCACGCCGCTACTTCCAGCAGCTCGTCTCCGCCCTCTGCTTCTGCCACCGAAACGGCGTCGCACACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGCCGACGGCAACCTCAAGGTCTCCGACTTCGGTCTCTCCGCGTTGCCGGAGCATCTCAAAAACGGCCTGCTCCACACGGCTTGCGGCACACCGGCGTACACCGCACCGGAGATCCTCCGCCGGATCGGGTACGACGGTTCCGTCGCCGACGCGTGGTCGTGCGGCGTAATACTCTACGTGTTGCTCGCCGGTCACCTTCCGTTCGACGATTCCAACATTCCGGCGATGTGCAAGAGGATCTCCCGGCGGGATTACCAGTTCCCGGCGTGGGTTTCTCGACCGGCGCGAAACCTGATCTACCAACTACTTGACCCGAACCCGAAGACCCGAATGAGATTGGAGGCTGTGGTGGAGAATTCGTGGTACAAGAAATCCCTAAAAGAAGCAGCTGAAGAGAGCGTGTTCGAATCGGATTTGTATAACAAGTGTTGCGGAGACGGTTACAAATTGGGAATGAATGCGTTTGATATAATATCGATGTCTTCGGGCCTTGACTTGAGGGGGTTGTTCGAAACGACGTCGGAAAACAGGAGAGAGAAGAGGTTCACATCGAATAAGGATGTGGAGGTGATTGAGGAGAAAGTGAAGGAGGTTGGTGGGAGTTTGGGGTTCAGGGTTGAGATTGGGAAGAATGGGACAATTGGGTTGGGGAAAGGGAAGGTGGCAATAGTGGTTGAGGTGTTTCAGATTGTGCCTCAATTGTTGTTAGTGGCACTGAAACTAGTGGATGGTGGGTTGGAGTTTGAGAATCTTCATTGGGCTGATTGGAAAATTGGTCTTCAAGATGTTGTTCTCTCTTGGCATAATAATAATGAAACACCACTCTCTCTGTGA 1302 0.5561 MERRQPSPSPPPSPPSRTILGKYQLTRFLGRGNFAKVYQAVSLTDGTTVAVKMIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILKIHEVMATKTKIYLIVDYAGGGELFSKIFRRGRLPENVARRYFQQLVSALCFCHRNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRRIGYDGSVADAWSCGVILYVLLAGHLPFDDSNIPAMCKRISRRDYQFPAWVSRPARNLIYQLLDPNPKTRMRLEAVVENSWYKKSLKEAAEESVFESDLYNKCCGDGYKLGMNAFDIISMSSGLDLRGLFETTSENRREKRFTSNKDVEVIEEKVKEVGGSLGFRVEIGKNGTIGLGKGKVAIVVEVFQIVPQLLLVALKLVDGGLEFENLHWADWKIGLQDVVLSWHNNNETPLSL. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04243 433 FunFam Non-specific serine/threonine protein kinase 16 108 - -
Seca7g04243 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 396 - -
Seca7g04243 433 CDD CIPK_C 309 417 - -
Seca7g04243 433 Gene3D Transferase(Phosphotransferase) domain 1 15 310 - -
Seca7g04243 433 FunFam Non-specific serine/threonine protein kinase 14 303 - -
Seca7g04243 433 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Seca7g04243 433 Gene3D Kinase associated domain 1, KA1 311 421 - -
Seca7g04243 433 SUPERFAMILY Protein kinase-like (PK-like) 19 283 IPR011009 -
Seca7g04243 433 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04243 433 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04243 433 Pfam NAF domain 308 363 IPR004041 GO:0007165
Seca7g04243 433 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04243 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Seca7g04243 433 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Seca7g04243 433 FunFam Non-specific serine/threonine protein kinase 306 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04243 Seca-Chr7 125655081 125656382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04243 6 426 Miscellaneous Gene Families AT3G23000 57.309 1.43e-174 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca7g04243 Pkinase 4.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04243 K12761 - gmx:100305372 683.715