Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04239 ATGACAACAAGTTGCATCAAACCCCATCATCCCTTATGTGTTTCTCTCTTGCTACTATTACTCTTCCCTTTCCTTCTTGATGCTCAGACTCCAAGACAAGAAAACAACACAGGTTTCACCTGCACTGTCACTGATCAAAACAGGTATCCATGTCAAGCCTATGCTTTCTACAGAGCTTCAAGCCCAAATTTTCTTGACCTTGCTTCCATAGCTGACCTTTTCTCTGTTAGCCGCCTCATGATCTCAAACCCCAGCAACATATCAAACCCTTCTTCTCCTTTAGTCCCTAATCAACCCCTTTTGATTCCCTTAACTTGCTCTTGCAACAGAGTCAACACCACCTTTGGTTCACTCTCTTATGCCAACATCTCTTATACTATCAAACCAAATGACACCTACTTCATTGTATCCACCTTCATGTTTCAGAATCTCACTACTTACCCTTCTGTGGAGGTTGTGAACCCAACTCTTGTAGCTACTAACCTATCAATTGGTGTTAATGTTATATTCCCTATCTTCTGCATGTGTCCCAATAGAACCACTCAGGATTCAGCTAATTATATGATCTCCTATGTTGTTCAACCCTCTGATAACATATCATCTATTGCTTCAAGTTTTGGATCAAGGGAACAGTCTATAATTGATGTGAATGGTGATACTCTTCATGATTATGATACCATATTTGTTCCTGTGACAAGGTTGCCTGTTCTGTCACAACCAACTGTTGTTCCTTCTGCTCCTCCTCCTGGAAATGGGACTGCAAGTGGAAGTGGAAGCTCTGATGATAGGACTGGGACTGTTAGAGGGTTGGCCATTGGGTTGGGAATTGTTGGGTTGTTGTTGATTTTGGTGATTGGGTTGTGGGTTTATAGGGAGGTTGTGTTCAAGGATAGGTTGTGGATGGTCAAAGATGAGGAACAACAGAGGCAGAGGAACTTGTATTTGGGAGGGAAAGGGAGCAAAGAGAACAAGGAAATGGATGTTAAGTTGATGGCTAATGTATCAGATTGCTTAGACAAGTACAGGGTTTTTGGAATTGAAGAATTGATTGAAGCCACTGATGGGTTTAGTGAAAATTGCTTGATTCAAGGGTCTGTATATAAAGGCTCAATTGATGGGGAGGTCTATGCAATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAGGGATTTTGCATAGACCAAGAAGAAGGAAATTGCTATTTAATCTATGAATATGTGGAGAATGGATCTCTCTACTCATGGCTGCATGAGGACAGAAAGGAAAAGCTGAACTGGAAAACAAGGCTGAGAATAGCCATTGACATTGCCAATGGTCTCCAATACATCCATGAACACACAAGGCCACGAGTTGTGCACAAAGACATAAAGAGCAGCAACATTCTCTTGGACTTCAACATGAGAGCCAAAATTGCCAACTTTGGGCTAGCAAAATCAGGAATGAATGCCATTACAATGCACATTGTGGGAACACAAGGCTATATTGCCCCTGAATATCTAGCTGATGGTGTGGTCTCAACAAAGATGGATGTGTTTGCTTTTGGGGTTGTTTTGCTTGAACTAATTTCAGGGAAAGAAGCCATTGATGAAGAGGGAAATCTCTTGTCAGCAAGTGCCATCAAAATCTTTGAAATGAAAAGTGAGCAAGAGAAGGCTAGGAGATTGAAGGAATGGTTGGATAATGCAATTTTAAAGGAGACATGCTCAATGGAAGGTTTGATGGGTGTTCTCAATGTTGCACTTTCTTGTTTGAATAGAGACCCATCAAAGAGGCCCAGCATAGTGGATATTGCCTATGCACTAAGTAAAAGTGAAGATGCAGGCTTTGACATGTCAGATGAAGGGATTGGTTCACCAAGGTTGATAGCTAGGTGA 1923 0.416 MTTSCIKPHHPLCVSLLLLLLFPFLLDAQTPRQENNTGFTCTVTDQNRYPCQAYAFYRASSPNFLDLASIADLFSVSRLMISNPSNISNPSSPLVPNQPLLIPLTCSCNRVNTTFGSLSYANISYTIKPNDTYFIVSTFMFQNLTTYPSVEVVNPTLVATNLSIGVNVIFPIFCMCPNRTTQDSANYMISYVVQPSDNISSIASSFGSREQSIIDVNGDTLHDYDTIFVPVTRLPVLSQPTVVPSAPPPGNGTASGSGSSDDRTGTVRGLAIGLGIVGLLLILVIGLWVYREVVFKDRLWMVKDEEQQRQRNLYLGGKGSKENKEMDVKLMANVSDCLDKYRVFGIEELIEATDGFSENCLIQGSVYKGSIDGEVYAIKKMKWNAYEELKILQKKVNHGNLVKLEGFCIDQEEGNCYLIYEYVENGSLYSWLHEDRKEKLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDFNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFAFGVVLLELISGKEAIDEEGNLLSASAIKIFEMKSEQEKARRLKEWLDNAILKETCSMEGLMGVLNVALSCLNRDPSKRPSIVDIAYALSKSEDAGFDMSDEGIGSPRLIAR. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04239 640 ProSiteProfiles LysM domain profile. 189 236 IPR018392 -
Seca7g04239 640 MobiDBLite consensus disorder prediction 248 262 - -
Seca7g04239 640 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 619 - -
Seca7g04239 640 CDD LysM 189 229 IPR018392 -
Seca7g04239 640 Pfam Protein kinase domain 364 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04239 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Seca7g04239 640 SMART serkin_6 356 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04239 640 SUPERFAMILY Protein kinase-like (PK-like) 341 616 IPR011009 -
Seca7g04239 640 ProSiteProfiles Protein kinase domain profile. 338 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04239 640 Pfam LysM domain 191 229 IPR018392 -
Seca7g04239 640 Gene3D Phosphorylase Kinase; domain 1 325 422 - -
Seca7g04239 640 FunFam PTI1-like tyrosine-protein kinase 3 423 629 - -
Seca7g04239 640 Gene3D Transferase(Phosphotransferase) domain 1 423 630 - -
Seca7g04239 640 MobiDBLite consensus disorder prediction 240 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04239 Seca-Chr7 125596954 125600079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04239 38 619 Receptor kinase-like Gene Family AT2G23770 34.343 3.43e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca7g04239 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04239 - - lang:109352405 925.62