Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04238 ATGGAAAAGACAGTGGCATATGAGAATGATCTCAACCTCAAGGCAACAGAACTTAGATTGGGGTTGCCAGGGACTGAGGAAAAGGAGGAGAAAACCATGGCTTGTGTGAAAAGCAACAAAAGGCAATTGCCTGAAACTTCTGAAGAGTCTGCTTCTATTTCCAAGGCCTCACATGACCAACAAGTTGAGAGTGATGCAGCCCCTCCTGCCAAGGCAAAGATAGTGGGATGGCCACCAATCAGATCCTACAGGAAAAACAGCTTGCTGGAAGCTGAGGGTGCTGGGATCTATGTGAAAGTGAGCATGGATGGTGCTCCTTACCTCAGGAAGATTGACTTGAAGGTCTATAGGGGCTATCCAGAACTCCTCAAAGGTTTAGAAACCATGTTCAAGTTGACCATAGCTTTTTCTTATGCTGTGACTAACCTGGGTTTTCTAATTTCAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 621 0.4493 MEKTVAYENDLNLKATELRLGLPGTEEKEEKTMACVKSNKRQLPETSEESASISKASHDQQVESDAAPPAKAKIVGWPPIRSYRKNSLLEAEGAGIYVKVSMDGAPYLRKIDLKVYRGYPELLKGLETMFKLTIAFSYAVTNLGFLISGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGTEARGLGCGV. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04238 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 200 IPR003311 GO:0005634|GO:0006355
Seca7g04238 206 Gene3D - 90 206 - -
Seca7g04238 206 ProSiteProfiles PB1 domain profile. 95 196 IPR000270 GO:0005515
Seca7g04238 206 SUPERFAMILY CAD & PB1 domains 88 195 - -
Seca7g04238 206 FunFam Auxin-responsive protein 90 206 - -
Seca7g04238 206 MobiDBLite consensus disorder prediction 22 36 - -
Seca7g04238 206 MobiDBLite consensus disorder prediction 22 68 - -
Seca7g04238 206 MobiDBLite consensus disorder prediction 39 61 - -
Seca7g04238 206 Pfam AUX/IAA family 16 203 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04238 Seca-Chr7 125566663 125568236 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04238 29 205 B3 DNA Binding Superfamily AT4G23980 27.374 6.76e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Seca7g04238 AUX_IAA 5.6e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04238 K14484 - gmx:100800212 318.546