Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04234 ATGGCAACTTTGCTGGGCAAGGAGCATGATTTGAACCTGAAGGAAACAGAGCTTTGCCTGGGTTTGCCTCCAAGGGCCAACGGAAAGAGAGGGTTCTCTGAAACAGTTGATCTAAAGCTTAATCTTCAATCCAAGCAAGATCTGAATGAAAATTTGAAGGATGTCTCAAAGGAAAATACCCTCCATAAGGATCCAGCAACAAAGCCACCATCTAAGAAGAATATGATTGATAGTGGGTATTTGGAATATTTCAGGGCACAAGTGGTTGGTTGGCCACCAGTGCGGTCATACAGGAAGAATATTATGTCACAAAAGGGTAATAGTGAAGATGGCACTGATCAGAAGACAACAAATAGCACTAATTCTGGGGCACTTGTCAAGGTTTCCATGGATGGTGCTCCTTACCTTCGCAAAGTGGACTTGAAAATCTACAAAAGCTACCAAGAATTATCCTCTGCTCTGCTCAAAATGTTCAGATCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGGTGGATCTTCTAAACAGCTCTGAGTATGTGCCAACCTATAAAGATAAGGATGGGGACTGGATGCTCGTTGGTGATGTTCCATGGGAGATGTTTGTTGAATCGTGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCGATTGGGCTTGCGCCAAGAGCCATGGAAAAATGCAAAAGCAGAAGCTGA 726 0.438 MATLLGKEHDLNLKETELCLGLPPRANGKRGFSETVDLKLNLQSKQDLNENLKDVSKENTLHKDPATKPPSKKNMIDSGYLEYFRAQVVGWPPVRSYRKNIMSQKGNSEDGTDQKTTNSTNSGALVKVSMDGAPYLRKVDLKIYKSYQELSSALLKMFRSFTMGNYGAQGMIDFMNESKLVDLLNSSEYVPTYKDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04234 241 ProSiteProfiles PB1 domain profile. 123 223 IPR000270 GO:0005515
Seca7g04234 241 MobiDBLite consensus disorder prediction 52 70 - -
Seca7g04234 241 Pfam AUX/IAA family 26 232 IPR033389 -
Seca7g04234 241 Gene3D - 117 235 - -
Seca7g04234 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 228 IPR003311 GO:0005634|GO:0006355
Seca7g04234 241 FunFam Auxin-responsive protein 118 233 - -
Seca7g04234 241 MobiDBLite consensus disorder prediction 52 72 - -
Seca7g04234 241 SUPERFAMILY CAD & PB1 domains 118 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04234 Seca-Chr7 125407483 125410056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04234 61 226 B3 DNA Binding Superfamily AT2G46530 27.692 5.74e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g04234 AUX_IAA 3.3e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04234 K14484 - gmx:100810762 363.229