Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04232 ATGGATCGCTTTTTCCCTGAAAAGCTTCTGGGTGAGATTTTTTGGGATGAACCTCTTTCAGCTACAAATCAAAGTGATTTTGTTCCGGATTCCCAGATCATGAGAGCTGAACATTGTCCTCCCCCAACTCAAAGCGCTTTTGTTCAATATAGAAACCTACCCACAATTAAGTTTGGGGAAGATAGTTCTCTAAACGGATCAAATACCCAGGCCATGAGTAAAAGAATGCTAGCATTCTTGAGAAAAAATAAGCCTATTGTAGAGAAAGATAACGTAGCAGAGCATGAAAGAGAACGTTGTTTCAGGCACATGATTAATGAAAGAATGCGGAGGCAGAGGCAGAGGCAATATTGCTTGAACCTGCATTCAATGTTACCTCATGGATCCAAAACAGATAATAATTCTGTAGTTCAAATGGCAGCGAAGGAGATTCAAAGGCTACAGGGATGCAAAGAGGAGTTACAGAGGAAAAATTTTGTGCTTGAAGCGAATCTTGAAGCAGTTAAGAGCAACAAAATTGGTGGAAGCAAAGTTCAATATTTAAGAGTGCCATATCCTACATCTGGAATTGATTCTATTGTTGAGACTCTTAAATGCTTGAAAGGCCTTGGAGTGGATACTAGAAGCATCAAATCAAAATTTTCCCCACAGGAATTGTTTGCAGTGTTGGAGATACAAACCGAGATTGCAGATACTGACGTGGAAAGGGCTATTCAGAGAACACTTGATGAGCTTGAGTGGAAGCTTCAGTCTCATGTCCTGGAAGGTTCTGAAATGCAGAGATTAGAATATGAAGAGTCAGACCGAATTTTTTAG 816 0.4007 MDRFFPEKLLGEIFWDEPLSATNQSDFVPDSQIMRAEHCPPPTQSAFVQYRNLPTIKFGEDSSLNGSNTQAMSKRMLAFLRKNKPIVEKDNVAEHERERCFRHMINERMRRQRQRQYCLNLHSMLPHGSKTDNNSVVQMAAKEIQRLQGCKEELQRKNFVLEANLEAVKSNKIGGSKVQYLRVPYPTSGIDSIVETLKCLKGLGVDTRSIKSKFSPQELFAVLEIQTEIADTDVERAIQRTLDELEWKLQSHVLEGSEMQRLEYEESDRIF. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04232 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
Seca7g04232 271 Pfam Helix-loop-helix DNA-binding domain 102 148 IPR011598 GO:0046983
Seca7g04232 271 SMART finulus 104 153 IPR011598 GO:0046983
Seca7g04232 271 Coils Coil 137 171 - -
Seca7g04232 271 Gene3D - 88 164 IPR036638 GO:0046983
Seca7g04232 271 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 244 IPR044658 -
Seca7g04232 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 163 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04232 Seca-Chr7 125367374 125369645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04232 42 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 37.766 5.91e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04232 - - gmx:100815874 345.125