Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04208 ATGGAGAAGACAAGAGCGGTAGTGTTATCGGCGAAGGAGGCATTCGAGAAGCTTGAGAAGGTTGGAGAAGGGACATATGGGAAGGTGTACAGGGCAAGAGAAAAGGCAACTGGGAAGATCGTTGCTCTCAAGAAGACTCGCCTCCATGAAGACGAAGAAGGTGTCCCTCCCACCACTCTTCGTGAAGTTTCCATTCTGCGAATGCTCTCCCGCGATCCCCATGTCGTCAAGTTAATGGATGTGAAACAGGGTCAGAACAAGGAAGGGAAGACGGTGCTCTACTTGGTCTTTGAGTACATGGACACCGATCTCAAGAAATACATTCGCAGTTTCCGTCAAACCGGAGAAAACATTCCACCCAAAACTGTCAAAAGCTTGATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATAGCTGATCTTGGACTTGCTCGAGCATATACTGTGCCAATTAAGAAGTACACACATGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTCCTTATGGGAGCTACCCATTACTCAATGGCAGTGGATATGTGGTCTGTTGCCTGCATATTTGCTGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACAACTCCTTCATATATTCAGGCTGTTGGGCACTCCTAATGAAGAGGTGTGGCCAGGCGTTAGTAAACTAATGAACTGGCATGAATACCCCCAGTGGAGACCTCAGAGTCTGTCAACTGCTGTACCAACTTTGGATGAGCTTGGACTTGATCTACTATCTCAAATGTTGCAATATGAACCTTCCAAGCGGATTTCTGCGAAGAAAGCTATGGAACACCCTTACTTTGATGACCTGGACAAGACCTATCTTTAG 942 0.466 MEKTRAVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVKLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRSFRQTGENIPPKTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAYTVPIKKYTHEILTLWYRAPEVLMGATHYSMAVDMWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWRPQSLSTAVPTLDELGLDLLSQMLQYEPSKRISAKKAMEHPYFDDLDKTYL. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04208 313 SUPERFAMILY Protein kinase-like (PK-like) 12 309 IPR011009 -
Seca7g04208 313 PIRSF ILK 3 288 - -
Seca7g04208 313 FunFam Cyclin-dependent kinase B2,2 11 101 - -
Seca7g04208 313 Gene3D Phosphorylase Kinase; domain 1 10 101 - -
Seca7g04208 313 Pfam Protein kinase domain 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04208 313 Gene3D Transferase(Phosphotransferase) domain 1 102 312 - -
Seca7g04208 313 SMART serkin_6 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04208 313 PANTHER CELL DIVISION PROTEIN KINASE 13 306 - -
Seca7g04208 313 ProSiteProfiles Protein kinase domain profile. 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04208 313 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Seca7g04208 313 FunFam Cyclin-dependent kinase 2 103 312 - -
Seca7g04208 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04208 Seca-Chr7 124855204 124857436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04208 8 313 Core Cell Cycle Gene Families AT1G20930 86.645 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca7g04208 Pkinase 2.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04208 K07760 - gmx:100808302 595.504