Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04198 ATGAAGGGTCGCAAATCTAAAGCCGAATCTAAGAAAGTCGATGCCAAACTTGCTGTGAATAAGAAGAAAGGTGGCACAGTCACCAAGCCGGCCAAGAAGGGAAAGGCCGCCAAAGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGACAATCCTAACAACAAAGCAGTCTCTGCTGTTGGCAAAGCTGCTGGAGCCAAATGGAAATCCATGTTTGATGTTGAGAAAGCACCATATGTGGCAAAGTCAGAGAAACGAAAGGTCGAGTATGAGAAAAATATGAGAGCCTACAACAACAGACAGGATGAAGATCCTACTTCTGCGGATGAAGAATCTGAGAAGTCAATGTCAGAAGTGAATGATGAGGATGAAGGAGATTATGAGGGGAGTGACGAGGAGGAGGATGACGATGAGTAG 459 0.4553 MKGRKSKAESKKVDAKLAVNKKKGGTVTKPAKKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKDNPNNKAVSAVGKAAGAKWKSMFDVEKAPYVAKSEKRKVEYEKNMRAYNNRQDEDPTSADEESEKSMSEVNDEDEGDYEGSDEEEDDDE. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04198 152 Gene3D High mobility group box domain 27 128 IPR036910 -
Seca7g04198 152 MobiDBLite consensus disorder prediction 96 152 - -
Seca7g04198 152 MobiDBLite consensus disorder prediction 1 47 - -
Seca7g04198 152 MobiDBLite consensus disorder prediction 129 152 - -
Seca7g04198 152 SUPERFAMILY HMG-box 27 113 IPR036910 -
Seca7g04198 152 CDD HMG-box_AtHMGB1-like 44 104 - -
Seca7g04198 152 SMART hmgende2 42 113 IPR009071 -
Seca7g04198 152 MobiDBLite consensus disorder prediction 96 128 - -
Seca7g04198 152 Pfam HMG (high mobility group) box 43 112 IPR009071 -
Seca7g04198 152 Coils Coil 94 114 - -
Seca7g04198 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 112 IPR009071 -
Seca7g04198 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 147 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04198 Seca-Chr7 124663363 124666022 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca7g04198 HMG_box 2.1e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04198 K25507 - gmx:100500173 184.496