Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g04198 | ATGAAGGGTCGCAAATCTAAAGCCGAATCTAAGAAAGTCGATGCCAAACTTGCTGTGAATAAGAAGAAAGGTGGCACAGTCACCAAGCCGGCCAAGAAGGGAAAGGCCGCCAAAGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGACAATCCTAACAACAAAGCAGTCTCTGCTGTTGGCAAAGCTGCTGGAGCCAAATGGAAATCCATGTTTGATGTTGAGAAAGCACCATATGTGGCAAAGTCAGAGAAACGAAAGGTCGAGTATGAGAAAAATATGAGAGCCTACAACAACAGACAGGATGAAGATCCTACTTCTGCGGATGAAGAATCTGAGAAGTCAATGTCAGAAGTGAATGATGAGGATGAAGGAGATTATGAGGGGAGTGACGAGGAGGAGGATGACGATGAGTAG | 459 | 0.4553 | MKGRKSKAESKKVDAKLAVNKKKGGTVTKPAKKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKDNPNNKAVSAVGKAAGAKWKSMFDVEKAPYVAKSEKRKVEYEKNMRAYNNRQDEDPTSADEESEKSMSEVNDEDEGDYEGSDEEEDDDE. | 153 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g04198 | 152 | Gene3D | High mobility group box domain | 27 | 128 | IPR036910 | - | |
Seca7g04198 | 152 | MobiDBLite | consensus disorder prediction | 96 | 152 | - | - | |
Seca7g04198 | 152 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Seca7g04198 | 152 | MobiDBLite | consensus disorder prediction | 129 | 152 | - | - | |
Seca7g04198 | 152 | SUPERFAMILY | HMG-box | 27 | 113 | IPR036910 | - | |
Seca7g04198 | 152 | CDD | HMG-box_AtHMGB1-like | 44 | 104 | - | - | |
Seca7g04198 | 152 | SMART | hmgende2 | 42 | 113 | IPR009071 | - | |
Seca7g04198 | 152 | MobiDBLite | consensus disorder prediction | 96 | 128 | - | - | |
Seca7g04198 | 152 | Pfam | HMG (high mobility group) box | 43 | 112 | IPR009071 | - | |
Seca7g04198 | 152 | Coils | Coil | 94 | 114 | - | - | |
Seca7g04198 | 152 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 43 | 112 | IPR009071 | - | |
Seca7g04198 | 152 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 1 | 147 | IPR031061 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g04198 | Seca-Chr7 | 124663363 | 124666022 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Seca7g04198 | HMG_box | 2.1e-21 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g04198 | K25507 | - | gmx:100500173 | 184.496 |