Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04197 ATGAAGGGTGGCAAATCTAAAGCCGAATCTAAGAAAGTCGATGCCAAACTTGTTGTGAATAAGAAGAAAGGTGGCACAGTCACCAAGCCGGCCAAGAAGGGAAAGGCCGCCAAAGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGACCATCCTAACAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCTGGAGCCAAATGGAAATCCATGTCTGATGATTTTCAGGAGAAAGCACCATATGTGGCAAAGTCAGAGAAACGAAAGGTAGAGTATGAGAAGAATATGAGAGCCTACAACAGCAGACAGGCTGAAGGTCCTACTGCTGCAGATGAAGAATCGGAGAAGTCAATGTCAGAAGTGAATGATGAGGATGAAGGAGATGATGAGGGGAGTGACGAGGAGGAGGATGACGATGAGTAG 465 0.4645 MKGGKSKAESKKVDAKLVVNKKKGGTVTKPAKKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKDHPNNKAVSAVGKAAGAKWKSMSDDFQEKAPYVAKSEKRKVEYEKNMRAYNSRQAEGPTAADEESEKSMSEVNDEDEGDDEGSDEEEDDDE. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04197 154 MobiDBLite consensus disorder prediction 1 47 - -
Seca7g04197 154 MobiDBLite consensus disorder prediction 81 154 - -
Seca7g04197 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 114 IPR009071 -
Seca7g04197 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Seca7g04197 154 Coils Coil 96 116 - -
Seca7g04197 154 SMART hmgende2 42 115 IPR009071 -
Seca7g04197 154 MobiDBLite consensus disorder prediction 1 19 - -
Seca7g04197 154 CDD HMG-box_AtHMGB1-like 44 106 - -
Seca7g04197 154 SUPERFAMILY HMG-box 30 124 IPR036910 -
Seca7g04197 154 Gene3D High mobility group box domain 27 129 IPR036910 -
Seca7g04197 154 MobiDBLite consensus disorder prediction 131 154 - -
Seca7g04197 154 Pfam HMG (high mobility group) box 43 114 IPR009071 -
Seca7g04197 154 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04197 Seca-Chr7 124615459 124618003 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca7g04197 HMG_box 1.7e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04197 K25507 - gmx:100500173 188.734