Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04194 ATGGTGGAGAAGTTCTTGACCGTGCCGCCATTTGAGTGCGCGTGGCGAGAGGAATTGAAATTCCGTGAAGCAGGTAGGGGTTGCGTGGCTTTTGAGGCATTCGCCTGCAACGATGTGACTCTGGTTTTCAGGGAGAATGTGGGAAGCCAGGGATATCACTATAAAAGAGATAGCAGTCCTCACTACACAATCATATTGGGGAGTCACAGGAATCGAAGGCTCAGAATTGAGGTCAATGGAAAAACGGTTGTTGATGTGGCAGGGGTTGGACTTTGCTGCTCAAACTCCTTTAGGAGCTATTGGATCAGCATCTACGATGGCTTGATCAGCATAGGTAATGGGAAATACCCTTTTCAGGATGTTGTGTTCCAGTGGTTGGATTCTCATCCTAATTGTAATGTTCAGTATATTGGGCTCAGTAGCTGGGATAAACATGTTAAGTATAGAAATGTTAATGTCCTGTCATTGAATCACACTCACATGCCCCTGTGGAAGCCTGTGGCTTTTGGTGATTATCAAGTTGAGGAGGGTGAGGTTGATATAGACAAACTGATGGATTATGACAAATGGGGCCTCAAAAATTTTCTCGAGAGTTGGGACTTGTCTGACATGTTATTCATCGTTGGTGATGAGGAAAGGCCTGTTCCTGCTCACAAGGCAATTTTAGCTGCATCTGGAAACTTTCCTTTGTGCTCCTCCTCCTTTGTCATCAAACTACCCACAGTATCTTACCAGCTTCTCCATGCACTACTTCACTACATCTACACTGGATGGACCCAGATTCCACAGGAACAACTTGGTTCTTTGAGGGATTTAAGTCTACAGTTTGAAGTGATGCCACTGGCGAAGCAATGTGAAGAGATTATGGAACGGTTTAAGCTAGATAAGAAGTTGTTGGACACGGGCAAGAATGTGGAGTTAACATATCCTTGTATCCAACCTCATTGTTCAACTTTACCCTCGCTTCCTATCAGCATTGAGAGACTGAGACAATTGAAATTAACGGGCGAGTACAGTGATGTAAAGATCTACATTGAGGGTTATGGGCTTGTTGCACAAGCACATAAAATTGTTCTTAGCTTGTGGAGTATTACCTTTGCCAAGATGTTCACAAATGGAATGAGTGAAAGTGTATCCTCAGAGGTTACTTTATGGGATGTGCCAGCAGAAGCTTTCACGGCTATGCTTGACTTCTTATATGATGGACAATTGAATGAGAAAATTATAGATTCTGGTTCTTTGTTGCTCCAGCTCCTTTTATTGGCTGATCAATTTGGAGTGACTTTTCTTCACCAAGAATGCTGCAAAATGCTTTTAGAATGCCTCTCAGAGGTAGTTTGGTAA 1344 0.4315 MVEKFLTVPPFECAWREELKFREAGRGCVAFEAFACNDVTLVFRENVGSQGYHYKRDSSPHYTIILGSHRNRRLRIEVNGKTVVDVAGVGLCCSNSFRSYWISIYDGLISIGNGKYPFQDVVFQWLDSHPNCNVQYIGLSSWDKHVKYRNVNVLSLNHTHMPLWKPVAFGDYQVEEGEVDIDKLMDYDKWGLKNFLESWDLSDMLFIVGDEERPVPAHKAILAASGNFPLCSSSFVIKLPTVSYQLLHALLHYIYTGWTQIPQEQLGSLRDLSLQFEVMPLAKQCEEIMERFKLDKKLLDTGKNVELTYPCIQPHCSTLPSLPISIERLRQLKLTGEYSDVKIYIEGYGLVAQAHKIVLSLWSITFAKMFTNGMSESVSSEVTLWDVPAEAFTAMLDFLYDGQLNEKIIDSGSLLLQLLLLADQFGVTFLHQECCKMLLECLSEVVW. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04194 447 CDD BTB_POZ_ZBTB_KLHL-like 338 405 - -
Seca7g04194 447 Gene3D Potassium Channel Kv1.1; Chain A 324 444 IPR011333 -
Seca7g04194 447 SUPERFAMILY POZ domain 191 290 IPR011333 -
Seca7g04194 447 ProSiteProfiles BTB domain profile. 339 408 IPR000210 GO:0005515
Seca7g04194 447 Gene3D Potassium Channel Kv1.1; Chain A 190 306 IPR011333 -
Seca7g04194 447 SUPERFAMILY POZ domain 327 439 IPR011333 -
Seca7g04194 447 PANTHER OS05G0345500 PROTEIN 3 442 - -
Seca7g04194 447 CDD BTB_POZ_ZBTB_KLHL-like 201 276 - -
Seca7g04194 447 SMART BTB_4 202 293 IPR000210 GO:0005515
Seca7g04194 447 SMART BTB_4 339 442 IPR000210 GO:0005515
Seca7g04194 447 Pfam Farnesoic acid 0-methyl transferase 50 146 IPR022041 -
Seca7g04194 447 Pfam BTB/POZ domain 330 440 IPR000210 GO:0005515
Seca7g04194 447 Pfam BTB/POZ domain 192 291 IPR000210 GO:0005515
Seca7g04194 447 ProSiteProfiles BTB domain profile. 202 263 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04194 Seca-Chr7 124549129 124551995 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca7g04194 BTB 1.3e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04194 - - gmx:100810794 789.645